UHGV-1341737

Genome information

vOTU vOTU-020075

Genome length 29,804 bps

CDS count 44

Completeness 82.79% (medium-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-1341737
vOTU ID	vOTU-020075
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413632_NODE_501_length_29804_cov_3.840398
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.97
Jumbo phage	No

Genome content
Genome length	29,804 bps
GC content	33.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.73%
Average CDS length	633.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1341737_5	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1341737_5	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1341737_5	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1341737_5	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1341737_5	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1341737_5	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1341737_5	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1341737_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1341737_5	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1341737_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1341737_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1341737_6	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-1341737_6	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-1341737_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1341737_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1341737_6	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1341737_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-1341737_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1341737_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1341737_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1341737_11	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-1341737_11	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1341737_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1341737_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1341737_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1341737_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1341737_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1341737_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1341737_12	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1341737_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1341737_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1341737_14	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-1341737_14	eggNOG-mapper	1462526.BN990_01827	HNH nucleases	NA
UHGV-1341737_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1341737_15	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-1341737_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1341737_16	UniRef90	UniRef90_UPI001D09358B	HNH endonuclease	NA
UHGV-1341737_16	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-1341737_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1341737_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1341737_17	PHROG	phrog_1066	NA	unknown function
UHGV-1341737_17	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-1341737_17	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1341737_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1341737_18	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-1341737_18	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-1341737_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1341737_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1341737_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1341737_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1341737_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1341737_19	UniRef90	UniRef90_A0A412CHK9	Phage portal protein	NA
UHGV-1341737_19	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-1341737_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1341737_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1341737_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1341737_20	KOfam	K06904	NA	NA
UHGV-1341737_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1341737_20	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-1341737_20	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-1341737_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1341737_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1341737_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1341737_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1341737_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1341737_21	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-1341737_21	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-1341737_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1341737_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1341737_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1341737_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1341737_22	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1341737_22	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-1341737_22	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1341737_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1341737_23	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-1341737_23	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-1341737_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1341737_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1341737_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1341737_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-1341737_24	UniRef90	UniRef90_A0A412CHY1	Head-tail adaptor protein	NA
UHGV-1341737_24	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-1341737_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1341737_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1341737_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1341737_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1341737_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1341737_25	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-1341737_25	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1341737_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1341737_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1341737_26	PHROG	phrog_525	NA	unknown function
UHGV-1341737_26	eggNOG-mapper	445335.CBN_1383	NA	NA
UHGV-1341737_26	Pfam	PF20765	NA	DUF6838
UHGV-1341737_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1341737_27	PHROG	phrog_1480	tail sheath	tail
UHGV-1341737_27	UniRef90	UniRef90_UPI00195B2F80	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1341737_27	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-1341737_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1341737_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1341737_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1341737_28	PHROG	phrog_365	tail protein	tail
UHGV-1341737_28	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-1341737_28	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-1341737_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1341737_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1341737_29	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1341737_29	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-1341737_29	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1341737_29	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1341737_29	Structural annotation	PF08890	NA	NA
UHGV-1341737_30	PHROG	phrog_2722	NA	unknown function
UHGV-1341737_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1341737_31	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-1341737_31	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-1341737_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1341737_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1341737_31	COG	COG5283	Phage-related tail protein	NA
UHGV-1341737_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1341737_32	PHROG	phrog_5184	NA	unknown function
UHGV-1341737_32	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-1341737_32	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-1341737_32	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1341737_32	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1341737_32	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1341737_33	PHROG	phrog_400	tail protein	tail
UHGV-1341737_33	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-1341737_33	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-1341737_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1341737_33	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-1341737_34	PHROG	phrog_579	NA	unknown function
UHGV-1341737_34	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-1341737_34	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-1341737_34	Pfam	PF10844	NA	DUF2577
UHGV-1341737_34	Structural annotation	PF10844	NA	NA
UHGV-1341737_35	PHROG	phrog_120	baseplate protein	tail
UHGV-1341737_35	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-1341737_35	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-1341737_35	Pfam	PF10934	NA	DUF2634
UHGV-1341737_35	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1341737_35	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1341737_36	PHROG	phrog_6	baseplate protein	tail
UHGV-1341737_36	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-1341737_36	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-1341737_36	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1341737_36	COG	COG3299	NA	NA
UHGV-1341737_36	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1341737_37	PHROG	phrog_521	tail protein	tail
UHGV-1341737_37	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-1341737_37	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-1341737_37	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1341737_37	COG	COG3778	NA	NA
UHGV-1341737_37	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1341737_38	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-1341737_38	Structural annotation	PF12571	NA	NA
UHGV-1341737_39	PHROG	phrog_18608	NA	unknown function
UHGV-1341737_39	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-1341737_40	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-1341737_42	KOfam	K14059	int; integrase	NA
UHGV-1341737_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1341737_42	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-1341737_42	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-1341737_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1341737_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1341737_42	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1341737_43	PHROG	phrog_199	holin	lysis
UHGV-1341737_43	UniRef90	UniRef90_A0A378NSW3	Phage-related holin (Lysis protein)	NA
UHGV-1341737_43	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-1341737_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1341737_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1341737_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1341737_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1341737_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1341737_44	PHROG	phrog_822	amidase	lysis
UHGV-1341737_44	UniRef90	UniRef90_UPI0018C4EA8D	peptidoglycan recognition protein family protein	NA
UHGV-1341737_44	eggNOG-mapper	864563.HMPREF9166_0546	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1341737_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1341737_44	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1341737_44	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA