UHGV-1341843

Genome information

vOTU vOTU-020218

Genome length 36,966 bps

CDS count 70

Completeness 83.25% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1341843
vOTU ID	vOTU-020218
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Norman_93_NODE_7_length_36966_cov_18.676682
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.83
Jumbo phage	No

Genome content
Genome length	36,966 bps
GC content	51.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.41%
Average CDS length	486.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1341843_3	PHROG	phrog_38832	NA	unknown function
UHGV-1341843_3	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1341843_5	PHROG	phrog_924	NA	unknown function
UHGV-1341843_5	UniRef90	UniRef90_A0A6I7G0Z3	NA	NA
UHGV-1341843_5	Pfam	PF04448	NA	DUF551
UHGV-1341843_5	Structural annotation	NF041588	NA	NA
UHGV-1341843_6	PHROG	phrog_8684	NA	unknown function
UHGV-1341843_6	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-1341843_6	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-1341843_6	Pfam	PF09643	YopX protein	YopX
UHGV-1341843_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1341843_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1341843_7	UniRef90	UniRef90_A0A1C5WAG7	Restriction alleviation protein, Lar family	NA
UHGV-1341843_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1341843_7	Structural annotation	PF14354	NA	NA
UHGV-1341843_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1341843_9	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-1341843_9	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1341843_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1341843_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1341843_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1341843_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1341843_10	UniRef90	UniRef90_A0A2Z4QBA4	Regulatory protein	NA
UHGV-1341843_10	eggNOG-mapper	1582156.A0A0A8WJ71_9CAUD	DNA binding	NA
UHGV-1341843_10	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1341843_10	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1341843_10	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1341843_11	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1341843_11	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1341843_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1341843_12	PHROG	phrog_10250	NA	unknown function
UHGV-1341843_12	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-1341843_12	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-1341843_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1341843_12	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1341843_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1341843_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1341843_12	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1341843_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-1341843_13	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-1341843_13	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1341843_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1341843_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1341843_14	Pfam	PF04448	NA	DUF551
UHGV-1341843_14	Structural annotation	NF041588	NA	NA
UHGV-1341843_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1341843_15	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-1341843_15	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1341843_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1341843_15	COG	COG2369	NA	NA
UHGV-1341843_15	Structural annotation	PF06152	NA	NA
UHGV-1341843_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1341843_18	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1341843_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1341843_19	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-1341843_19	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1341843_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1341843_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1341843_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1341843_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1341843_20	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-1341843_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1341843_21	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1341843_22	PHROG	phrog_3366	NA	unknown function
UHGV-1341843_22	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1341843_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1341843_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1341843_23	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1341843_23	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1341843_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1341843_23	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1341843_24	PHROG	phrog_3266	tail completion	connector
UHGV-1341843_24	eggNOG-mapper	1226322.HMPREF1545_00055	NA	NA
UHGV-1341843_24	Structural annotation	PF12691	NA	NA
UHGV-1341843_25	PHROG	phrog_3099	NA	unknown function
UHGV-1341843_25	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1341843_25	Structural annotation	TIGR02126	NA	NA
UHGV-1341843_26	PHROG	phrog_11299	NA	unknown function
UHGV-1341843_26	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-1341843_26	Structural annotation	PF10666	NA	NA
UHGV-1341843_27	PHROG	phrog_706	NA	unknown function
UHGV-1341843_27	UniRef90	UniRef90_UPI0018A0FACA	Gp15 family bacteriophage protein	NA
UHGV-1341843_27	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-1341843_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1341843_27	Structural annotation	PF06854	NA	NA
UHGV-1341843_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1341843_28	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-1341843_28	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-1341843_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1341843_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1341843_29	PHROG	phrog_1194	NA	unknown function
UHGV-1341843_29	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1341843_29	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1341843_30	PHROG	phrog_32744	NA	unknown function
UHGV-1341843_30	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1341843_30	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1341843_31	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-1341843_32	PHROG	phrog_4628	tail fiber assembly	tail
UHGV-1341843_32	UniRef90	UniRef90_UPI0019591B61	toxin-antitoxin system toxin subunit	NA
UHGV-1341843_32	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-1341843_33	PHROG	phrog_2310	NA	unknown function
UHGV-1341843_33	eggNOG-mapper	756499.Desde_1351	NA	NA
UHGV-1341843_34	PHROG	phrog_937	hemolysin	other
UHGV-1341843_34	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-1341843_36	PHROG	phrog_1129	holin	lysis
UHGV-1341843_36	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1341843_36	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1341843_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1341843_36	Structural annotation	PF06946	NA	NA
UHGV-1341843_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1341843_37	PHROG	phrog_670	endolysin	lysis
UHGV-1341843_37	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1341843_37	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-1341843_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1341843_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1341843_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1341843_38	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-1341843_38	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1341843_40	PHROG	phrog_3754	NA	unknown function
UHGV-1341843_40	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1341843_41	PHROG	phrog_21718	NA	unknown function
UHGV-1341843_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1341843_42	PHROG	phrog_22984	NA	unknown function
UHGV-1341843_43	PHROG	phrog_16490	NA	unknown function
UHGV-1341843_43	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1341843_44	PHROG	phrog_20016	NA	unknown function
UHGV-1341843_44	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1341843_44	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1341843_44	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1341843_45	PHROG	phrog_28802	NA	unknown function
UHGV-1341843_45	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1341843_45	Structural annotation	PF12510	NA	NA
UHGV-1341843_46	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1341843_47	KOfam	K14059	int; integrase	NA
UHGV-1341843_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1341843_47	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-1341843_47	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-1341843_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1341843_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1341843_47	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1341843_48	PHROG	phrog_33872	NA	unknown function
UHGV-1341843_48	eggNOG-mapper	1007096.BAGW01000023_gene158	NA	NA
UHGV-1341843_49	PHROG	phrog_33872	NA	unknown function
UHGV-1341843_50	PHROG	phrog_10292	NA	unknown function
UHGV-1341843_50	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-1341843_50	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-1341843_50	Pfam	PF05154	TM2 domain	TM2
UHGV-1341843_50	COG	COG2314	NA	NA
UHGV-1341843_50	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-1341843_51	UniRef90	UniRef90_A0A3A9F9H2	S24 family peptidase	NA
UHGV-1341843_51	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-1341843_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1341843_51	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1341843_52	PHROG	phrog_1914	NA	unknown function
UHGV-1341843_52	UniRef90	UniRef90_G9YPL5	Peptidase_M78 domain-containing protein	NA
UHGV-1341843_52	eggNOG-mapper	936572.HMPREF1148_0685	NA	NA
UHGV-1341843_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1341843_52	COG	COG1592	Rubrerythrin	NA
UHGV-1341843_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1341843_53	UniRef90	UniRef90_G9YPL6	Bacteriophage CI repressor protein	NA
UHGV-1341843_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1341843_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1341843_54	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-1341843_54	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-1341843_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1341843_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1341843_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1341843_56	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-1341843_58	PHROG	phrog_25245	NA	unknown function
UHGV-1341843_58	UniRef90	UniRef90_A0A1C5W8M4	Cell wall-binding protein yocH	NA
UHGV-1341843_58	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-1341843_58	Pfam	PF06725	3D domain	3D
UHGV-1341843_58	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1341843_58	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-1341843_60	PHROG	phrog_674	NA	unknown function
UHGV-1341843_60	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-1341843_60	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1341843_60	Pfam	PF07083	NA	DUF1351
UHGV-1341843_60	Structural annotation	PF07083	NA	NA
UHGV-1341843_61	PHROG	phrog_3657	NA	unknown function
UHGV-1341843_61	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1341843_61	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-1341843_62	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1341843_62	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1341843_62	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-1341843_62	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1341843_62	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1341843_62	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1341843_62	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1341843_63	PHROG	phrog_16304	NA	unknown function
UHGV-1341843_63	UniRef90	UniRef90_U2R397	NA	NA
UHGV-1341843_63	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-1341843_63	Pfam	PF19808	NA	DUF6291
UHGV-1341843_63	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1341843_63	Structural annotation	PF19808	NA	NA
UHGV-1341843_64	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1341843_64	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1341843_64	UniRef90	UniRef90_U2QJC2	SF4 helicase domain-containing protein	NA
UHGV-1341843_64	eggNOG-mapper	1226322.HMPREF1545_00017	DnaB-like helicase C terminal domain	NA
UHGV-1341843_64	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1341843_64	COG	COG0305	Replicative DNA helicase	NA
UHGV-1341843_64	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-1341843_66	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1341843_66	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1341843_68	PHROG	phrog_10714	NA	unknown function
UHGV-1341843_68	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1341843_68	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA