UHGV-1341860

Genome information

Genome length 22,116 bps

CDS count 19

Completeness 52.31% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1341860
vOTU ID	vOTU-033715
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341646_NODE_545_length_22116_cov_3.907031
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.92
Jumbo phage	No

Genome content
Genome length	22,116 bps
GC content	43.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	95.15%
Average CDS length	1,108.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1341860_1	PHROG	phrog_1066	NA	unknown function
UHGV-1341860_1	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-1341860_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1341860_2	UniRef90	UniRef90_A0A1C6K9N5	Phage terminase-like protein, large subunit	NA
UHGV-1341860_2	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-1341860_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1341860_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1341860_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1341860_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1341860_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1341860_3	UniRef90	UniRef90_A0A1C6K9V7	Phage portal protein, HK97 family	NA
UHGV-1341860_3	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1341860_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1341860_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1341860_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1341860_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1341860_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1341860_4	UniRef90	UniRef90_A0A1C6KA38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1341860_4	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-1341860_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1341860_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1341860_4	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1341860_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1341860_5	UniRef90	UniRef90_A0A1C6KA65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1341860_5	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-1341860_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1341860_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1341860_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1341860_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1341860_6	PHROG	phrog_5223	neck protein	connector
UHGV-1341860_6	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-1341860_6	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-1341860_6	Structural annotation	TIGR01560	NA	NA
UHGV-1341860_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1341860_7	UniRef90	UniRef90_R5ITS8	Phage head-tail adaptor	NA
UHGV-1341860_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1341860_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1341860_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1341860_8	Structural annotation	PF05657	NA	NA
UHGV-1341860_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1341860_9	UniRef90	UniRef90_A0A1C6KB54	Phage protein, HK97 gp10 family	NA
UHGV-1341860_9	eggNOG-mapper	1235792.C808_03060	NA	NA
UHGV-1341860_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1341860_9	Structural annotation	TIGR01725	NA	NA
UHGV-1341860_10	PHROG	phrog_88	major tail protein	tail
UHGV-1341860_10	UniRef90	UniRef90_A0A1C6KA12	Phage major tail protein, phi13 family	NA
UHGV-1341860_10	eggNOG-mapper	1094508.Tsac_2419	phage major tail protein	NA
UHGV-1341860_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1341860_10	COG	COG5492	NA	NA
UHGV-1341860_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1341860_11	PHROG	phrog_2115	tail protein	tail
UHGV-1341860_11	Structural annotation	PF11836	NA	NA
UHGV-1341860_12	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1341860_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1341860_12	UniRef90	UniRef90_UPI0016556A77	phage tail tape measure protein	NA
UHGV-1341860_12	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-1341860_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1341860_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1341860_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1341860_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1341860_13	UniRef90	UniRef90_A0A1C6IW65	Phage tail protein	NA
UHGV-1341860_13	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-1341860_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1341860_13	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-1341860_14	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-1341860_14	Structural annotation	PF07761	NA	NA
UHGV-1341860_15	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-1341860_15	PHROG	phrog_18110	NA	unknown function
UHGV-1341860_15	UniRef90	UniRef90_A0A1C6KA93	Phage minor structural protein, N-terminal region	NA
UHGV-1341860_15	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-1341860_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1341860_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1341860_15	Pfam	PF04917	Bacterial shufflon protein, N-terminal constant region	Shufflon_N
UHGV-1341860_15	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1341860_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1341860_15	COG	COG4926	Phage-related protein	NA
UHGV-1341860_15	Structural annotation	PF06605, PF20086, PF18099, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1341860_16	PHROG	phrog_2566	NA	unknown function
UHGV-1341860_16	eggNOG-mapper	1139219.I569_00244	NA	NA
UHGV-1341860_17	PHROG	phrog_199	holin	lysis
UHGV-1341860_17	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-1341860_17	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-1341860_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1341860_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1341860_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1341860_18	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1341860_18	PHROG	phrog_435	endolysin	lysis
UHGV-1341860_18	UniRef90	UniRef90_A0A1C6J814	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1341860_18	eggNOG-mapper	1204534.J9QE22_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1341860_18	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1341860_18	Pfam	PF05036	SPOR domain	SPOR
UHGV-1341860_18	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1341860_19	KOfam	K14059	int; integrase	NA
UHGV-1341860_19	PHROG	phrog_1	integrase	integration and excision
UHGV-1341860_19	UniRef90	UniRef90_A0A6N3CT48	Site-specific tyrosine recombinase XerC	NA
UHGV-1341860_19	eggNOG-mapper	658088.HMPREF0987_00682	Phage integrase family	NA
UHGV-1341860_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1341860_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA