UHGV-1341971

Genome information

Genome length 33,339 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1341971
vOTU ID	vOTU-012465
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341707_NODE_413_length_33339_cov_2.387694
BioSample	SAMN00715257
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.35
Jumbo phage	No

Genome content
Genome length	33,339 bps
GC content	55.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.06%
Average CDS length	672.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1341971_1	PHROG	phrog_1029	NA	unknown function
UHGV-1341971_1	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-1341971_2	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1341971_2	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-1341971_2	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-1341971_3	PHROG	phrog_7566	NA	unknown function
UHGV-1341971_3	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1341971_4	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1341971_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1341971_5	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1341971_5	Pfam	PF05772	NinB protein	NinB
UHGV-1341971_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1341971_6	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1341971_7	PHROG	phrog_10280	NA	unknown function
UHGV-1341971_7	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-1341971_9	UniRef90	UniRef90_UPI0019572A8A	helix-turn-helix domain-containing protein	NA
UHGV-1341971_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1341971_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1341971_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1341971_10	UniRef90	UniRef90_A0A6N8H052	Helix-turn-helix domain-containing protein	NA
UHGV-1341971_10	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-1341971_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1341971_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1341971_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1341971_10	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1341971_12	KOfam	K14059	int; integrase	NA
UHGV-1341971_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1341971_12	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-1341971_12	eggNOG-mapper	1408437.JNJN01000084_gene1284	Belongs to the 'phage' integrase family	NA
UHGV-1341971_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1341971_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1341971_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1341971_13	PHROG	phrog_13256	NA	unknown function
UHGV-1341971_13	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1341971_14	PHROG	phrog_1863	NA	unknown function
UHGV-1341971_14	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-1341971_15	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1341971_15	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-1341971_15	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-1341971_15	eggNOG-mapper	264732.Moth_2422	G5 domain protein	NA
UHGV-1341971_15	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1341971_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1341971_15	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-1341971_19	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1341971_19	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1341971_19	UniRef90	UniRef90_A0A357TPP5	Reverse transcriptase domain-containing protein	NA
UHGV-1341971_19	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1341971_19	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1341971_19	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1341971_19	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-1341971_20	PHROG	phrog_17147	NA	unknown function
UHGV-1341971_20	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-1341971_20	Structural annotation	PF10651	NA	NA
UHGV-1341971_21	Structural annotation	PF10651	NA	NA
UHGV-1341971_22	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-1341971_23	PHROG	phrog_26795	NA	unknown function
UHGV-1341971_23	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-1341971_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1341971_24	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1341971_24	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-1341971_25	PHROG	phrog_33680	NA	unknown function
UHGV-1341971_25	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-1341971_25	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-1341971_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1341971_25	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1341971_26	Structural annotation	PF12363	NA	NA
UHGV-1341971_27	PHROG	phrog_88	major tail protein	tail
UHGV-1341971_27	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-1341971_28	eggNOG-mapper	1195236.CTER_5107	NA	NA
UHGV-1341971_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1341971_29	UniRef90	UniRef90_S0FP72	Phage protein, HK97 gp10 family	NA
UHGV-1341971_29	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-1341971_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1341971_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1341971_29	Structural annotation	TIGR01725	NA	NA
UHGV-1341971_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1341971_30	UniRef90	UniRef90_UPI00195B41A2	phage head closure protein	NA
UHGV-1341971_30	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-1341971_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1341971_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1341971_31	PHROG	phrog_5223	neck protein	connector
UHGV-1341971_31	UniRef90	UniRef90_UPI00195CBB4A	DNA-packaging protein	NA
UHGV-1341971_31	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-1341971_31	Structural annotation	TIGR01560	NA	NA
UHGV-1341971_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-1341971_32	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-1341971_32	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1341971_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1341971_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1341971_34	KOfam	K06904	NA	NA
UHGV-1341971_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1341971_34	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-1341971_34	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-1341971_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1341971_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1341971_34	COG	COG3740	Phage head maturation protease	NA
UHGV-1341971_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1341971_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-1341971_35	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-1341971_35	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-1341971_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1341971_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1341971_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1341971_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1341971_36	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-1341971_36	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-1341971_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1341971_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1341971_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1341971_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1341971_37	PHROG	phrog_1066	NA	unknown function
UHGV-1341971_37	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1341971_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1341971_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1341971_38	UniRef90	UniRef90_UPI00195B555F	HNH endonuclease	NA
UHGV-1341971_38	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-1341971_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1341971_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1341971_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1341971_39	UniRef90	UniRef90_A0A6N8H4L3	Sigma70_r4 domain-containing protein	NA
UHGV-1341971_39	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1341971_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1341971_39	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1341971_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1341971_41	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1341971_41	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-1341971_41	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1341971_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1341971_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1341971_41	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1341971_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1341971_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1341971_42	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-1341971_42	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1341971_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-1341971_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1341971_43	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1341971_43	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1341971_43	UniRef90	UniRef90_A0A8F4L8U7	AAA_31 domain-containing protein	NA
UHGV-1341971_43	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1341971_43	Pfam	PF13614	AAA domain	AAA_31
UHGV-1341971_43	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1341971_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1341971_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1341971_44	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-1341971_44	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-1341971_44	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1341971_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1341971_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-1341971_44	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1341971_45	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1341971_45	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-1341971_45	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-1341971_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1341971_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1341971_45	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1341971_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1341971_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1341971_46	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-1341971_46	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1341971_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1341971_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1341971_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1341971_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1341971_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1341971_47	PHROG	phrog_1029	NA	unknown function
UHGV-1341971_47	UniRef90	UniRef90_A0A4V6L4T1	NA	NA
UHGV-1341971_47	eggNOG-mapper	411471.SUBVAR_05833	NA	NA