UHGV-1342416

Genome information

Genome length 23,329 bps

CDS count 38

Completeness 63.82% (medium-quality)

geNomad score 0.9630

Prediction confidence Confident

Genome information
Genome ID	UHGV-1342416
vOTU ID	vOTU-033721
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_HCO_61_NODE_298_length_23329_cov_3.874366
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9630
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.37
Jumbo phage	No

Genome content
Genome length	23,329 bps
GC content	46.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	95.14%
Average CDS length	587.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342416_2	PHROG	phrog_88	major tail protein	tail
UHGV-1342416_2	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1342416_2	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1342416_6	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-1342416_6	COG	COG5283	Phage-related tail protein	NA
UHGV-1342416_7	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-1342416_8	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-1342416_12	PHROG	phrog_38707	NA	unknown function
UHGV-1342416_12	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-1342416_12	COG	COG4675	Phage tail collar domain	NA
UHGV-1342416_23	KOfam	K14059	int; integrase	NA
UHGV-1342416_23	PHROG	phrog_1	integrase	integration and excision
UHGV-1342416_23	UniRef90	UniRef90_A0A2V2E7R6	Tyr recombinase domain-containing protein	NA
UHGV-1342416_23	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-1342416_23	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1342416_23	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1342416_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1342416_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1342416_23	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1342416_24	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1342416_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1342416_24	UniRef90	UniRef90_A0A7Z7QFU8	Transcriptional repressor	NA
UHGV-1342416_24	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-1342416_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342416_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1342416_24	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-1342416_25	UniRef90	UniRef90_A0A1F0YAV1	Phage repressor protein	NA
UHGV-1342416_25	eggNOG-mapper	1140001.I571_01122	NA	NA
UHGV-1342416_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342416_25	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1342416_30	Pfam	PF11195	NA	DUF2829
UHGV-1342416_31	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-1342416_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342416_31	UniRef90	UniRef90_A0A6N7S5U7	AAA family ATPase	NA
UHGV-1342416_31	eggNOG-mapper	1444309.JAQG01000013_gene1928	nuclear chromosome segregation	NA
UHGV-1342416_31	PADLOC	AAA_15	NA	NA
UHGV-1342416_31	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-1342416_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1342416_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1342416_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1342416_32	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1342416_32	UniRef90	UniRef90_A0A6G8APQ8	Recombinase RecT	NA
UHGV-1342416_32	eggNOG-mapper	1449338.JQLU01000005_gene3745	NA	NA
UHGV-1342416_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1342416_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1342416_33	UniRef90	UniRef90_A0A223MJW4	Lactamase_B domain-containing protein	NA
UHGV-1342416_33	eggNOG-mapper	743719.PaelaDRAFT_5633	Metallo-beta-lactamase superfamily	NA
UHGV-1342416_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1342416_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1342416_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1342416_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1342416_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1342416_38	UniRef90	UniRef90_A0A371JBS1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1342416_38	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-1342416_38	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-1342416_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1342416_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1342416_38	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA