UHGV-1342469

Genome information

Genome length 37,738 bps

CDS count 51

Completeness 94.18% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-1342469
vOTU ID	vOTU-012467
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341645_NODE_216_length_37738_cov_2.054030
BioSample	SAMN00715195
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.42
Jumbo phage	No

Genome content
Genome length	37,738 bps
GC content	43.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.18%
Average CDS length	692.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342469_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-1342469_1	PHROG	phrog_7573	NA	unknown function
UHGV-1342469_1	UniRef90	UniRef90_A0A350VV93	Spore coat protein CotJC	NA
UHGV-1342469_1	eggNOG-mapper	511680.BUTYVIB_02029	PFAM Manganese containing catalase	NA
UHGV-1342469_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-1342469_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-1342469_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1342469_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1342469_2	UniRef90	UniRef90_R7MZ39	Recombinase family protein	NA
UHGV-1342469_2	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-1342469_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1342469_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-1342469_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1342469_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1342469_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1342469_3	eggNOG-mapper	1211814.CAPG01000036_gene1854	Nacht domain	NA
UHGV-1342469_3	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-1342469_3	COG	COG5635	Predicted NTPase, NACHT family domain	NA
UHGV-1342469_4	eggNOG-mapper	1235802.C823_03127	NA	NA
UHGV-1342469_4	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-1342469_5	PHROG	phrog_5467	NA	unknown function
UHGV-1342469_5	UniRef90	UniRef90_A0A350VV98	NA	NA
UHGV-1342469_5	eggNOG-mapper	1235802.C823_03128	NA	NA
UHGV-1342469_5	Pfam	PF10088	NA	DUF2326
UHGV-1342469_5	COG	COG5293	NA	NA
UHGV-1342469_5	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-1342469_6	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1342469_6	eggNOG-mapper	1179226.AJXO01000005_gene1853	Phage minor capsid protein 2	NA
UHGV-1342469_6	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-1342469_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1342469_7	PHROG	phrog_87	metallo-protease	other
UHGV-1342469_7	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-1342469_7	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-1342469_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1342469_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1342469_7	Structural annotation	PF06114	NA	NA
UHGV-1342469_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1342469_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1342469_8	UniRef90	UniRef90_A0A3C1X9T6	XRE family transcriptional regulator	NA
UHGV-1342469_8	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-1342469_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342469_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1342469_8	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-1342469_9	UniRef90	UniRef90_A0A1M7SN53	HTH cro/C1-type domain-containing protein	NA
UHGV-1342469_9	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1342469_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342469_9	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1342469_14	eggNOG-mapper	877424.ATWC01000016_gene168	NA	NA
UHGV-1342469_14	Pfam	PF20323	NA	DUF6618
UHGV-1342469_14	Structural annotation	PF20323	NA	NA
UHGV-1342469_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1342469_15	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1342469_15	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-1342469_15	Structural annotation	PF21578	NA	NA
UHGV-1342469_16	PHROG	phrog_824	NA	unknown function
UHGV-1342469_16	UniRef90	UniRef90_UPI00164B300C	VRR-NUC domain-containing protein	NA
UHGV-1342469_16	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-1342469_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1342469_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1342469_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1342469_18	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-1342469_18	eggNOG-mapper	1111069.TCCBUS3UF1_7040	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1342469_18	Pfam	PF00075	RNase H	RNase_H
UHGV-1342469_18	COG	COG0328	Ribonuclease HI	NA
UHGV-1342469_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1342469_19	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-1342469_20	PHROG	phrog_4433	NA	unknown function
UHGV-1342469_20	eggNOG-mapper	1256908.HMPREF0373_03002	NA	NA
UHGV-1342469_20	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1342469_21	PHROG	phrog_8470	NA	unknown function
UHGV-1342469_21	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-1342469_21	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-1342469_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1342469_21	Structural annotation	PF14284	NA	NA
UHGV-1342469_22	PHROG	phrog_15077	NA	unknown function
UHGV-1342469_22	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-1342469_22	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-1342469_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1342469_23	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-1342469_23	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1342469_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1342469_24	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1342469_28	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-1342469_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1342469_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1342469_29	UniRef90	UniRef90_A0A350VVC0	Single-stranded DNA-binding protein	NA
UHGV-1342469_29	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1342469_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1342469_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1342469_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1342469_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1342469_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1342469_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1342469_31	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-1342469_31	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-1342469_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1342469_31	Structural annotation	PF07141	NA	NA
UHGV-1342469_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1342469_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1342469_32	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-1342469_32	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1342469_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1342469_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1342469_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-1342469_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1342469_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-1342469_34	UniRef90	UniRef90_UPI00164B7587	phage portal protein	NA
UHGV-1342469_34	eggNOG-mapper	1232449.BAHV02000010_gene2709	NA	NA
UHGV-1342469_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1342469_36	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-1342469_36	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-1342469_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1342469_36	COG	COG2369	NA	NA
UHGV-1342469_36	Structural annotation	PF06152	NA	NA
UHGV-1342469_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1342469_38	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-1342469_38	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1342469_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1342469_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-1342469_39	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-1342469_39	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-1342469_39	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1342469_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1342469_41	PHROG	phrog_3366	NA	unknown function
UHGV-1342469_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1342469_42	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-1342469_42	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-1342469_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1342469_42	Structural annotation	PF11114	NA	NA
UHGV-1342469_43	PHROG	phrog_3266	tail completion	connector
UHGV-1342469_43	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-1342469_43	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-1342469_43	Structural annotation	PF12691	NA	NA
UHGV-1342469_44	PHROG	phrog_3099	NA	unknown function
UHGV-1342469_44	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-1342469_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1342469_45	PHROG	phrog_11299	NA	unknown function
UHGV-1342469_45	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-1342469_45	Structural annotation	PF10666	NA	NA
UHGV-1342469_46	PHROG	phrog_706	NA	unknown function
UHGV-1342469_46	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-1342469_46	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1342469_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1342469_46	Structural annotation	PF06854	NA	NA
UHGV-1342469_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1342469_47	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-1342469_47	COG	COG1511	NA	NA
UHGV-1342469_48	PHROG	phrog_1194	NA	unknown function
UHGV-1342469_48	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-1342469_48	Pfam	PF20458	NA	DUF6711
UHGV-1342469_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1342469_49	PHROG	phrog_18190	NA	unknown function
UHGV-1342469_49	eggNOG-mapper	1235790.C805_00089	NA	NA