UHGV-1342669

Genome information

vOTU vOTU-019844

Genome length 22,842 bps

CDS count 47

Completeness 50.73% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-1342669
vOTU ID	vOTU-019844
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341716_NODE_708_length_22842_cov_6.694475
BioSample	SAMN00715266
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.31
Jumbo phage	No

Genome content
Genome length	22,842 bps
GC content	40.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.09%
Average CDS length	444.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342669_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1342669_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1342669_1	UniRef90	UniRef90_A0A1C5RZS0	Transcriptional regulator, y4mF family	NA
UHGV-1342669_1	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-1342669_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342669_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1342669_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1342669_2	Structural annotation	NF010188	NA	NA
UHGV-1342669_4	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-1342669_6	PHROG	phrog_6058	NA	unknown function
UHGV-1342669_6	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-1342669_7	AcrCatalog	cluster_17974	NA	NA
UHGV-1342669_10	Structural annotation	NF011879	NA	NA
UHGV-1342669_11	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-1342669_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1342669_12	UniRef90	UniRef90_A0A414X367	Single-stranded DNA-binding protein	NA
UHGV-1342669_12	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-1342669_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-1342669_12	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1342669_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1342669_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1342669_13	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-1342669_13	eggNOG-mapper	742765.HMPREF9457_02531	Single-strand binding protein family	NA
UHGV-1342669_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1342669_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1342669_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1342669_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1342669_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1342669_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1342669_14	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-1342669_14	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-1342669_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1342669_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1342669_15	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1342669_15	PHROG	phrog_11992	NA	unknown function
UHGV-1342669_15	UniRef90	UniRef90_A0A412EM56	DNA primase	NA
UHGV-1342669_15	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-1342669_15	PADLOC	drt-UG29	DRT	DRT
UHGV-1342669_15	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1342669_15	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1342669_15	Structural annotation	PF01807	NA	NA
UHGV-1342669_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1342669_16	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-1342669_16	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-1342669_16	Pfam	PF06048	NA	DUF927
UHGV-1342669_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1342669_16	COG	COG5519	NA	NA
UHGV-1342669_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1342669_17	Structural annotation	NF010187	NA	NA
UHGV-1342669_18	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-1342669_18	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1342669_18	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1342669_18	Structural annotation	PF01726, COG0640	NA	NA
UHGV-1342669_22	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1342669_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1342669_22	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-1342669_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1342669_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1342669_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1342669_24	PHROG	phrog_20593	NA	unknown function
UHGV-1342669_24	AcrCatalog	cluster_27421	NA	NA
UHGV-1342669_25	PHROG	phrog_874	NA	unknown function
UHGV-1342669_25	UniRef90	UniRef90_C4IFC5	Upf86.8	NA
UHGV-1342669_25	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-1342669_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1342669_26	PHROG	phrog_8684	NA	unknown function
UHGV-1342669_26	UniRef90	UniRef90_A0A173W6W0	YopX protein	NA
UHGV-1342669_26	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-1342669_26	Pfam	PF09643	YopX protein	YopX
UHGV-1342669_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1342669_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1342669_29	PHROG	phrog_38832	NA	unknown function
UHGV-1342669_29	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-1342669_29	Structural annotation	PF09038	NA	NA
UHGV-1342669_32	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-1342669_32	AcrCatalog	cluster_11670	NA	NA
UHGV-1342669_33	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1342669_33	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-1342669_33	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1342669_33	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1342669_33	Structural annotation	PF16677	NA	NA
UHGV-1342669_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1342669_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1342669_34	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-1342669_34	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-1342669_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1342669_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1342669_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-1342669_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1342669_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-1342669_36	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1342669_36	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1342669_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1342669_37	PHROG	phrog_19280	NA	unknown function
UHGV-1342669_37	UniRef90	UniRef90_A0A1C5MAK6	NA	NA
UHGV-1342669_37	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-1342669_37	Pfam	PF19789	NA	DUF6273
UHGV-1342669_37	Structural annotation	PF19789	NA	NA
UHGV-1342669_38	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1342669_38	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-1342669_38	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-1342669_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1342669_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1342669_39	UniRef90	UniRef90_A0A3C1LSM0	Reverse transcriptase domain-containing protein	NA
UHGV-1342669_39	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1342669_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1342669_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1342669_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1342669_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1342669_42	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-1342669_42	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-1342669_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1342669_42	COG	COG2369	NA	NA
UHGV-1342669_42	Structural annotation	PF06152	NA	NA
UHGV-1342669_43	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-1342669_43	UniRef90	UniRef90_A0A173R8U8	Ribbon-helix-helix domain	NA
UHGV-1342669_43	eggNOG-mapper	476272.RUMHYD_01909	Ribbon-helix-helix domain	NA
UHGV-1342669_43	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-1342669_43	Structural annotation	PF12651, COG4710	NA	NA
UHGV-1342669_44	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342669_44	UniRef90	UniRef90_UPI0006B9EE43	AP2 domain-containing protein	NA
UHGV-1342669_44	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-1342669_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1342669_45	UniRef90	UniRef90_A0A3D0XVN5	Capsid protein (Fragment)	NA
UHGV-1342669_45	eggNOG-mapper	1125725.HMPREF1325_1324	Phage minor capsid protein 2	NA
UHGV-1342669_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1342669_45	COG	COG2369	NA	NA
UHGV-1342669_46	PHROG	phrog_3754	NA	unknown function
UHGV-1342669_46	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1342669_47	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1342669_47	eggNOG-mapper	476272.RUMHYD_01766	NA	NA