UHGV-1342924

Genome information

Genome length 41,843 bps

CDS count 48

Completeness 99.72% (high-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-1342924
vOTU ID	vOTU-061590
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_10017_NODE_226_length_41843_cov_4.525845
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.24
Jumbo phage	No

Genome content
Genome length	41,843 bps
GC content	47.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.86%
Average CDS length	839.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342924_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1342924_4	UniRef90	UniRef90_A0A2N2CA89	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1342924_4	eggNOG-mapper	255431.Q6UAS4_9CAUD	NA	NA
UHGV-1342924_4	Pfam	PF14359	NA	DUF4406
UHGV-1342924_4	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-1342924_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342924_7	UniRef90	UniRef90_A0A1Y3S9B9	YqaJ domain-containing protein	NA
UHGV-1342924_7	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1342924_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1342924_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1342924_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1342924_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1342924_8	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1342924_8	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1342924_8	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-1342924_8	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1342924_8	Pfam	PF03837	RecT family	RecT
UHGV-1342924_8	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1342924_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1342924_8	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1342924_9	PHROG	phrog_4973	NA	unknown function
UHGV-1342924_9	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-1342924_9	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1342924_9	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-1342924_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1342924_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1342924_10	UniRef90	UniRef90_A0A373B679	Single-stranded DNA-binding protein	NA
UHGV-1342924_10	eggNOG-mapper	1391647.AVSV01000039_gene1087	Single-stranded DNA-binding protein	NA
UHGV-1342924_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1342924_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1342924_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1342924_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1342924_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1342924_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1342924_11	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1342924_11	UniRef90	UniRef90_A0A1Q9J7D4	Phage_rep_org_N domain-containing protein	NA
UHGV-1342924_11	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1342924_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1342924_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1342924_11	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1342924_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1342924_14	UniRef90	UniRef90_UPI001934051C	NA	NA
UHGV-1342924_14	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-1342924_14	Pfam	PF06356	NA	DUF1064
UHGV-1342924_14	Structural annotation	PF06356	NA	NA
UHGV-1342924_16	PHROG	phrog_3136	NA	unknown function
UHGV-1342924_16	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1342924_16	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1342924_16	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1342924_16	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1342924_20	PHROG	phrog_10714	NA	unknown function
UHGV-1342924_20	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-1342924_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1342924_27	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1342924_27	UniRef90	UniRef90_UPI001D0245C4	terminase family protein	NA
UHGV-1342924_27	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-1342924_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1342924_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1342924_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1342924_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-1342924_28	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1342924_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1342924_29	KOfam	K07584	NA	NA
UHGV-1342924_29	PHROG	phrog_4478	peptidase	other
UHGV-1342924_29	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1342924_29	COG	COG2868	NA	NA
UHGV-1342924_29	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1342924_30	PHROG	phrog_13908	NA	unknown function
UHGV-1342924_30	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1342924_31	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1342924_31	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-1342924_31	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1342924_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1342924_31	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1342924_32	PHROG	phrog_15239	NA	unknown function
UHGV-1342924_33	PHROG	phrog_12105	NA	unknown function
UHGV-1342924_33	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1342924_34	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1342924_34	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1342924_34	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1342924_35	Structural annotation	NF038340	NA	NA
UHGV-1342924_36	PHROG	phrog_372	tail protein	tail
UHGV-1342924_36	UniRef90	UniRef90_UPI001EE154D9	NA	NA
UHGV-1342924_36	COG	COG4675	Phage tail collar domain	NA
UHGV-1342924_37	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1342924_39	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1342924_39	eggNOG-mapper	748224.HMPREF9436_02860	NA	NA
UHGV-1342924_39	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1342924_39	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-1342924_40	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1342924_40	UniRef90	UniRef90_A0A3D5IBL6	DEAD/DEAH box helicase	NA
UHGV-1342924_40	eggNOG-mapper	1235797.C816_04246	SNF2 family N-terminal domain	NA
UHGV-1342924_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1342924_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1342924_40	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-1342924_41	PHROG	phrog_22978	NA	unknown function
UHGV-1342924_41	UniRef90	UniRef90_A0A396QCY9	MuF_C domain-containing protein	NA
UHGV-1342924_41	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1342924_42	PHROG	phrog_16573	NA	unknown function
UHGV-1342924_42	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1342924_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1342924_45	PHROG	phrog_443	holin	lysis
UHGV-1342924_45	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1342924_45	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1342924_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1342924_45	Structural annotation	PF16945	NA	NA
UHGV-1342924_46	PHROG	phrog_9066	endolysin	lysis
UHGV-1342924_46	UniRef90	UniRef90_R7ID00	SH3 domain protein	NA
UHGV-1342924_46	Structural annotation	PF01551, PF08460, NF040883, COG0739, COG4991	NA	NA
UHGV-1342924_47	KOfam	K14059	int; integrase	NA
UHGV-1342924_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1342924_47	UniRef90	UniRef90_UPI001C124E9B	site-specific integrase	NA
UHGV-1342924_47	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-1342924_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1342924_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1342924_47	Structural annotation	PF00589, PF14659, PF12286, MF_01807, TIGR02224, COG4974	NA	NA