UHGV-1342938

Genome information

vOTU vOTU-020931

Genome length 43,294 bps

CDS count 70

Completeness 52.12% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1342938
vOTU ID	vOTU-020931
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_10018_NODE_65_length_46452_cov_7.523482
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.34
Jumbo phage	No

Genome content
Genome length	43,294 bps
GC content	36.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.35%
Average CDS length	561.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342938_1	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1342938_1	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-1342938_1	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-1342938_1	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-1342938_2	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1342938_2	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-1342938_2	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-1342938_2	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-1342938_3	PHROG	phrog_17622	NA	unknown function
UHGV-1342938_3	UniRef90	UniRef90_A0A1H4E8V3	ParB-like nuclease domain-containing protein	NA
UHGV-1342938_3	eggNOG-mapper	411476.BACOVA_03898	ParB-like nuclease domain	NA
UHGV-1342938_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1342938_3	Structural annotation	PF02195, TIGR04285	NA	NA
UHGV-1342938_6	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1342938_6	UniRef90	UniRef90_A0A7H1MQI5	NA	NA
UHGV-1342938_6	eggNOG-mapper	762982.HMPREF9442_01170	NA	NA
UHGV-1342938_6	Pfam	PF14386	NA	DUF4417
UHGV-1342938_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1342938_6	Structural annotation	PF14386	NA	NA
UHGV-1342938_7	Structural annotation	PF08299, NF004686	NA	NA
UHGV-1342938_8	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-1342938_12	Structural annotation	PF18195, COG5475	NA	NA
UHGV-1342938_13	Structural annotation	PF14469	NA	NA
UHGV-1342938_18	PHROG	phrog_872	NA	unknown function
UHGV-1342938_18	UniRef90	UniRef90_A0A412HHI1	NA	NA
UHGV-1342938_18	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-1342938_18	Pfam	PF11195	NA	DUF2829
UHGV-1342938_18	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1342938_18	Structural annotation	PF11195	NA	NA
UHGV-1342938_21	Structural annotation	NF037951	NA	NA
UHGV-1342938_24	dbAPIS	APIS047	NA	NA
UHGV-1342938_25	UniRef90	UniRef90_A0A3R6AB47	N-acetyltransferase	NA
UHGV-1342938_25	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1342938_25	Structural annotation	PF13673, MF_02018, NF000487, COG3153	NA	NA
UHGV-1342938_26	Structural annotation	PF17600	NA	NA
UHGV-1342938_27	Structural annotation	PF13069	NA	NA
UHGV-1342938_30	UniRef90	UniRef90_A0A353E7E9	Fructan hydrolase	NA
UHGV-1342938_30	eggNOG-mapper	470145.BACCOP_04168	NA	NA
UHGV-1342938_32	PHROG	phrog_8684	NA	unknown function
UHGV-1342938_32	UniRef90	UniRef90_UPI001C46BB39	YopX family protein	NA
UHGV-1342938_32	Pfam	PF09643	YopX protein	YopX
UHGV-1342938_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1342938_40	PHROG	phrog_625	NA	unknown function
UHGV-1342938_40	UniRef90	UniRef90_A0A6A7VVD8	ASCH domain-containing protein	NA
UHGV-1342938_40	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-1342938_41	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1342938_41	UniRef90	UniRef90_A0A5P0WZV7	MazG domain-containing protein	NA
UHGV-1342938_41	eggNOG-mapper	585502.HMPREF0645_2606	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1342938_41	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1342938_41	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1342938_41	Structural annotation	PF12643, MF_01020, NF002747, COG1694	NA	NA
UHGV-1342938_44	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1342938_44	PHROG	phrog_1	integrase	integration and excision
UHGV-1342938_44	UniRef90	UniRef90_A0A7H1MQK8	Tyrosine-type recombinase/integrase	NA
UHGV-1342938_44	eggNOG-mapper	357276.EL88_11600	Phage integrase SAM-like domain	NA
UHGV-1342938_44	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1342938_44	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1342938_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1342938_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1342938_44	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1342938_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1342938_45	UniRef90	UniRef90_A0A7H1MQ96	Helix-turn-helix transcriptional regulator	NA
UHGV-1342938_45	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-1342938_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1342938_45	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1342938_45	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1342938_47	UniRef90	UniRef90_A0A7H1MQ97	Helix-turn-helix domain-containing protein	NA
UHGV-1342938_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1342938_47	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1342938_48	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1342938_48	eggNOG-mapper	1122992.CBQQ010000072_gene1965	NA	NA
UHGV-1342938_49	Structural annotation	PF20338	NA	NA
UHGV-1342938_50	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1342938_50	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342938_50	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-1342938_50	eggNOG-mapper	457424.BFAG_02387	P-loop containing region of AAA domain	NA
UHGV-1342938_50	Pfam	PF13476	AAA domain	AAA_23
UHGV-1342938_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1342938_50	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1342938_51	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1342938_51	UniRef90	UniRef90_A0A7H1MQA1	Recombinase RecT	NA
UHGV-1342938_51	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-1342938_51	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1342938_52	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1342938_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1342938_52	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-1342938_52	eggNOG-mapper	357276.EL88_12605	Metallo-beta-lactamase superfamily	NA
UHGV-1342938_52	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1342938_52	dbAPIS	APIS058	NA	NA
UHGV-1342938_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1342938_52	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1342938_56	UniRef90	UniRef90_A0A7M1RY91	Nuclear pore complex-like protein	NA
UHGV-1342938_57	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-1342938_58	UniRef90	UniRef90_A0A3R5YJY4	DNA-binding protein	NA
UHGV-1342938_58	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1342938_58	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1342938_60	PHROG	phrog_26448	NA	unknown function
UHGV-1342938_60	eggNOG-mapper	1227276.HMPREF9148_00148	NA	NA
UHGV-1342938_60	Pfam	PF20647	NA	DUF6808
UHGV-1342938_60	Structural annotation	PF20647	NA	NA
UHGV-1342938_61	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342938_61	UniRef90	UniRef90_UPI00189871DD	NUMOD4 domain-containing protein	NA
UHGV-1342938_61	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-1342938_61	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1342938_61	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1342938_61	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1342938_61	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1342938_61	Structural annotation	PF04936	NA	NA
UHGV-1342938_62	eggNOG-mapper	1121101.HMPREF1532_02613	NA	NA
UHGV-1342938_63	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1342938_63	PHROG	phrog_7	endolysin	lysis
UHGV-1342938_63	UniRef90	UniRef90_UPI000D10C356	lysozyme	NA
UHGV-1342938_63	eggNOG-mapper	762968.HMPREF9441_00560	lysozyme	NA
UHGV-1342938_63	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1342938_63	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1342938_66	UniRef90	UniRef90_A0A255T5E7	CBM-cenC domain-containing protein	NA
UHGV-1342938_66	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1342938_66	Structural annotation	PF03944, PF03921, NF033675, COG4266	NA	NA
UHGV-1342938_67	PHROG	phrog_3267	tail protein	tail
UHGV-1342938_67	UniRef90	UniRef90_E1KUD5	Ig-like domain-containing protein	NA
UHGV-1342938_67	eggNOG-mapper	1392486.JIAF01000004_gene1824	NA	NA
UHGV-1342938_67	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-1342938_68	PHROG	phrog_17422	NA	unknown function
UHGV-1342938_68	eggNOG-mapper	1392486.JIAF01000004_gene815	NA	NA
UHGV-1342938_68	Structural annotation	PF14594, PF15536, TIGR01665, NF041740, COG4926	NA	NA
UHGV-1342938_69	PHROG	phrog_6305	tail protein	tail
UHGV-1342938_69	UniRef90	UniRef90_F3QSN0	Conserved domain protein	NA
UHGV-1342938_69	eggNOG-mapper	357276.EL88_22740	NA	NA
UHGV-1342938_69	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1342938_70	PHROG	phrog_14295	NA	unknown function
UHGV-1342938_70	eggNOG-mapper	357276.EL88_11230	NA	NA
UHGV-1342938_70	COG	COG1196	Chromosome segregation ATPase Smc	NA