UHGV-1343437

Genome information

vOTU vOTU-019776

Genome length 29,821 bps

CDS count 53

Completeness 81.24% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1343437
vOTU ID	vOTU-019776
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_10024_NODE_666_length_29821_cov_4.444467
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.79
Jumbo phage	No

Genome content
Genome length	29,821 bps
GC content	57.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.07%
Average CDS length	536.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1343437_1	Structural annotation	PF10651	NA	NA
UHGV-1343437_4	PHROG	phrog_26795	NA	unknown function
UHGV-1343437_4	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-1343437_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1343437_5	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1343437_5	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1343437_5	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1343437_5	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1343437_6	PHROG	phrog_33680	NA	unknown function
UHGV-1343437_6	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1343437_6	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-1343437_6	COG	COG5283	Phage-related tail protein	NA
UHGV-1343437_6	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1343437_7	Structural annotation	PF11836	NA	NA
UHGV-1343437_8	PHROG	phrog_88	major tail protein	tail
UHGV-1343437_8	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1343437_8	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1343437_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1343437_8	COG	COG5492	NA	NA
UHGV-1343437_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1343437_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1343437_9	Structural annotation	TIGR01725	NA	NA
UHGV-1343437_10	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1343437_10	Structural annotation	PF05657	NA	NA
UHGV-1343437_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1343437_11	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-1343437_11	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1343437_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1343437_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1343437_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1343437_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1343437_12	PHROG	phrog_5223	neck protein	connector
UHGV-1343437_12	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-1343437_12	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-1343437_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1343437_13	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1343437_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1343437_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1343437_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1343437_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1343437_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1343437_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1343437_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1343437_14	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1343437_14	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1343437_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1343437_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1343437_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1343437_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1343437_15	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-1343437_15	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1343437_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1343437_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1343437_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1343437_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1343437_16	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1343437_16	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1343437_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1343437_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1343437_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1343437_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1343437_17	PHROG	phrog_1066	NA	unknown function
UHGV-1343437_17	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1343437_17	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1343437_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1343437_18	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-1343437_18	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1343437_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1343437_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1343437_19	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1343437_19	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1343437_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1343437_20	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-1343437_20	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1343437_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1343437_21	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1343437_21	UniRef90	UniRef90_A0A413FXK5	Methyltransferase	NA
UHGV-1343437_21	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-1343437_21	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1343437_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1343437_21	COG	COG0863	DNA modification methylase	NA
UHGV-1343437_21	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1343437_22	Structural annotation	PF08271	NA	NA
UHGV-1343437_26	Structural annotation	PF10013	NA	NA
UHGV-1343437_31	PHROG	phrog_38832	NA	unknown function
UHGV-1343437_31	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1343437_32	PHROG	phrog_3136	NA	unknown function
UHGV-1343437_32	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1343437_32	eggNOG-mapper	198628.Dda3937_01763	ASCH	NA
UHGV-1343437_32	Pfam	PF04266	ASCH domain	ASCH
UHGV-1343437_32	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1343437_32	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1343437_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1343437_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1343437_35	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1343437_35	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1343437_35	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1343437_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1343437_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1343437_35	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1343437_37	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1343437_37	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-1343437_37	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-1343437_38	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1343437_38	UniRef90	UniRef90_UPI001E43F9BA	NA	NA
UHGV-1343437_38	eggNOG-mapper	1423732.BALS01000134_gene393	NA	NA
UHGV-1343437_38	Pfam	PF05037	NA	DUF669
UHGV-1343437_38	Structural annotation	PF05037, NF004948	NA	NA
UHGV-1343437_39	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-1343437_39	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-1343437_39	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-1343437_40	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1343437_40	UniRef90	UniRef90_A0A2Z4QBI4	AAA domain protein	NA
UHGV-1343437_40	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-1343437_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-1343437_40	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-1343437_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1343437_45	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1343437_45	Structural annotation	PF09035, NF040990	NA	NA
UHGV-1343437_46	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-1343437_46	UniRef90	UniRef90_A0A371AUE2	XRE family transcriptional regulator	NA
UHGV-1343437_46	eggNOG-mapper	1449336.JQLO01000001_gene2237	Transcriptional regulator, Cro CI family	NA
UHGV-1343437_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1343437_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1343437_46	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1343437_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1343437_47	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-1343437_47	UniRef90	UniRef90_A0A1G7UMC4	HTH cro/C1-type domain-containing protein	NA
UHGV-1343437_47	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-1343437_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1343437_47	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-1343437_48	Structural annotation	PF13601, TIGR04176, COG1846	NA	NA
UHGV-1343437_51	eggNOG-mapper	1298920.KI911353_gene413	NA	NA
UHGV-1343437_51	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-1343437_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1343437_53	UniRef90	UniRef90_A0A3D3D7T3	HTH cro/C1-type domain-containing protein	NA
UHGV-1343437_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1343437_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA