UHGV-1343635

Genome information

Genome length 28,911 bps

CDS count 44

Completeness 76.05% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-1343635
vOTU ID	vOTU-024696
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413696_NODE_711_length_28911_cov_3.027100
BioSample	SAMN00792041
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.78
Jumbo phage	No

Genome content
Genome length	28,911 bps
GC content	57.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.59%
Average CDS length	619.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1343635_1	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1343635_1	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-1343635_1	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-1343635_2	KOfam	K16899	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	NA
UHGV-1343635_2	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1343635_2	UniRef90	UniRef90_A0A807ZPP9	Nuclease	NA
UHGV-1343635_2	eggNOG-mapper	411464.DESPIG_01319	PD-(D/E)XK nuclease superfamily	NA
UHGV-1343635_2	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1343635_2	COG	COG2887	RecB family exonuclease	NA
UHGV-1343635_2	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1343635_5	Pfam	PF20505	NA	DUF6731
UHGV-1343635_6	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1343635_6	PHROG	phrog_8036	NA	unknown function
UHGV-1343635_6	UniRef90	UniRef90_A0A379G8I1	DNA-damage-inducible protein D	NA
UHGV-1343635_6	eggNOG-mapper	1123261.AXDW01000003_gene1879	DNA-damage-inducible protein d	NA
UHGV-1343635_6	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1343635_6	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1343635_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1343635_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1343635_7	UniRef90	UniRef90_UPI001C011417	LexA family transcriptional regulator	NA
UHGV-1343635_7	eggNOG-mapper	665942.HMPREF1022_02651	Peptidase S24-like	NA
UHGV-1343635_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1343635_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1343635_7	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1343635_7	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1343635_9	PHROG	phrog_3729	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1343635_9	UniRef90	UniRef90_UPI001C01B264	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1343635_9	eggNOG-mapper	398578.Daci_4111	NA	NA
UHGV-1343635_10	PHROG	phrog_10105	NA	unknown function
UHGV-1343635_10	eggNOG-mapper	1127514.H9C0S5_9CAUD	NA	NA
UHGV-1343635_10	Pfam	PF20081	NA	DUF6475
UHGV-1343635_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1343635_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1343635_11	UniRef90	UniRef90_G2H584	Single-stranded DNA-binding protein	NA
UHGV-1343635_11	eggNOG-mapper	883.DvMF_0813	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1343635_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1343635_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1343635_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1343635_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1343635_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1343635_12	PHROG	phrog_824	NA	unknown function
UHGV-1343635_12	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-1343635_12	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-1343635_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1343635_13	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-1343635_14	UniRef90	UniRef90_UPI000930F274	nrdD protein	NA
UHGV-1343635_14	eggNOG-mapper	665956.HMPREF1032_01737	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1343635_14	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1343635_14	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1343635_17	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1343635_17	PHROG	phrog_7	endolysin	lysis
UHGV-1343635_17	UniRef90	UniRef90_UPI0013ED228A	lysozyme	NA
UHGV-1343635_17	eggNOG-mapper	1218075.BAYA01000007_gene2667	Phage lysozyme	NA
UHGV-1343635_17	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1343635_17	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1343635_17	HAMAP	MF_04110	Endolysin	NA
UHGV-1343635_17	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1343635_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1343635_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1343635_20	UniRef90	UniRef90_UPI001786FDCF	terminase small subunit	NA
UHGV-1343635_20	eggNOG-mapper	1316932.MHH_c01510	Terminase small subunit	NA
UHGV-1343635_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1343635_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1343635_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1343635_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1343635_21	PHROG	phrog_2472	NA	unknown function
UHGV-1343635_21	UniRef90	UniRef90_UPI00194E96F0	terminase family protein	NA
UHGV-1343635_21	eggNOG-mapper	641491.DND132_2087	Terminase RNaseH-like domain	NA
UHGV-1343635_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1343635_21	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1343635_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1343635_22	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1343635_22	UniRef90	UniRef90_A0A516LL11	Putative portal protein	NA
UHGV-1343635_22	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-1343635_22	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1343635_22	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1343635_24	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-1343635_25	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1343635_25	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-1343635_25	eggNOG-mapper	1401065.HMPREF2130_10960	NA	NA
UHGV-1343635_25	Pfam	PF17236	NA	DUF5309
UHGV-1343635_25	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-1343635_26	PHROG	phrog_3982	NA	unknown function
UHGV-1343635_27	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-1343635_27	eggNOG-mapper	716928.AJQT01000006_gene2767	NA	NA
UHGV-1343635_27	Structural annotation	PF20387	NA	NA
UHGV-1343635_28	PHROG	phrog_240	head protein	head and packaging
UHGV-1343635_28	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-1343635_28	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-1343635_30	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1343635_30	UniRef90	UniRef90_A0A7S5Y917	Stabilization protein	NA
UHGV-1343635_30	eggNOG-mapper	264203.ZMO0390	NA	NA
UHGV-1343635_30	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1343635_31	COG	COG4675	Phage tail collar domain	NA
UHGV-1343635_34	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-1343635_35	PHROG	phrog_4287	DNA ejection protein	DNA, RNA and nucleotide metabolism
UHGV-1343635_35	UniRef90	UniRef90_A0A6A7M4K4	Peptidase S74 domain-containing protein	NA
UHGV-1343635_37	PHROG	phrog_13634	NA	unknown function
UHGV-1343635_37	eggNOG-mapper	1429851.X548_16610	lytic transglycosylase activity	NA
UHGV-1343635_37	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1343635_37	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1343635_41	PHROG	phrog_5795	tail protein	tail
UHGV-1343635_41	UniRef90	UniRef90_F7NE71	Tail collar domain-containing protein	NA
UHGV-1343635_41	eggNOG-mapper	1009370.ALO_01669	tail collar domain protein	NA
UHGV-1343635_41	COG	COG4675	Phage tail collar domain	NA
UHGV-1343635_41	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1343635_42	eggNOG-mapper	1347368.HG964410_gene7506	Chromatin associated protein KTI12	NA
UHGV-1343635_42	Pfam	PF13671	AAA domain	AAA_33
UHGV-1343635_42	COG	COG2844	UTP:GlnB (protein PII) uridylyltransferase	NA
UHGV-1343635_43	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1343635_43	UniRef90	UniRef90_UPI001C39751F	Phage tail assembly chaperone	NA
UHGV-1343635_43	eggNOG-mapper	411464.DESPIG_01098	Phage tail assembly chaperone protein	NA
UHGV-1343635_43	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1343635_43	Structural annotation	PF16778	NA	NA
UHGV-1343635_44	PHROG	phrog_11011	long tail fiber protein distal subunit	tail
UHGV-1343635_44	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N