UHGV-1343645

Genome information

Genome length 33,051 bps

CDS count 52

Completeness 98.80% (high-quality)

geNomad score 0.9427

Prediction confidence Confident

Genome information
Genome ID	UHGV-1343645
vOTU ID	vOTU-011497
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413696_NODE_587_length_33051_cov_7.713905
BioSample	SAMN00792041
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9427
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.34
Jumbo phage	No

Genome content
Genome length	33,051 bps
GC content	32.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.27%
Average CDS length	590.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1343645_1	PHROG	phrog_18996	NA	unknown function
UHGV-1343645_1	eggNOG-mapper	888060.HMPREF9081_1707	NA	NA
UHGV-1343645_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1343645_2	PHROG	phrog_435	endolysin	lysis
UHGV-1343645_2	UniRef90	UniRef90_A0A1H8EGV1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1343645_2	eggNOG-mapper	1232428.CAVO010000002_gene2340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1343645_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1343645_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1343645_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1343645_3	PHROG	phrog_199	holin	lysis
UHGV-1343645_3	UniRef90	UniRef90_A0A1H8EGR7	Toxin secretion/phage lysis holin	NA
UHGV-1343645_3	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-1343645_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1343645_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1343645_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1343645_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1343645_4	Structural annotation	PF13084	NA	NA
UHGV-1343645_6	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1343645_6	UniRef90	UniRef90_UPI001B24F493	phage tail protein	NA
UHGV-1343645_6	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1343645_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1343645_6	Structural annotation	PF12571, NF012201, COG5301	NA	NA
UHGV-1343645_7	PHROG	phrog_521	tail protein	tail
UHGV-1343645_7	UniRef90	UniRef90_UPI00195901ED	NA	NA
UHGV-1343645_7	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-1343645_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1343645_7	COG	COG3778	NA	NA
UHGV-1343645_7	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1343645_8	PHROG	phrog_6	baseplate protein	tail
UHGV-1343645_8	UniRef90	UniRef90_UPI001EF5EE5F	baseplate J/gp47 family protein	NA
UHGV-1343645_8	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-1343645_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1343645_8	COG	COG3299	NA	NA
UHGV-1343645_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1343645_9	PHROG	phrog_120	baseplate protein	tail
UHGV-1343645_9	UniRef90	UniRef90_UPI001957E83C	NA	NA
UHGV-1343645_9	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-1343645_9	Pfam	PF10934	NA	DUF2634
UHGV-1343645_9	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1343645_9	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1343645_10	PHROG	phrog_579	NA	unknown function
UHGV-1343645_10	UniRef90	UniRef90_UPI001EF6FB41	NA	NA
UHGV-1343645_10	eggNOG-mapper	568816.Acin_1330	NA	NA
UHGV-1343645_10	Pfam	PF10844	NA	DUF2577
UHGV-1343645_10	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-1343645_11	PHROG	phrog_400	tail protein	tail
UHGV-1343645_11	UniRef90	UniRef90_I0GWS1	Phage related protein	NA
UHGV-1343645_11	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-1343645_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1343645_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1343645_12	PHROG	phrog_5184	NA	unknown function
UHGV-1343645_12	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-1343645_12	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-1343645_12	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1343645_12	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1343645_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1343645_13	UniRef90	UniRef90_UPI00195C9640	phage tail tape measure protein	NA
UHGV-1343645_13	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-1343645_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1343645_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1343645_13	COG	COG5283	Phage-related tail protein	NA
UHGV-1343645_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1343645_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1343645_15	UniRef90	UniRef90_UPI00164E632C	XkdN-like protein	NA
UHGV-1343645_15	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1343645_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1343645_15	Structural annotation	PF08890	NA	NA
UHGV-1343645_16	PHROG	phrog_365	tail protein	tail
UHGV-1343645_16	UniRef90	UniRef90_UPI001EF6A2DF	phage tail tube protein	NA
UHGV-1343645_16	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-1343645_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1343645_16	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1343645_17	PHROG	phrog_1480	tail sheath	tail
UHGV-1343645_17	UniRef90	UniRef90_UPI00195D714C	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1343645_17	eggNOG-mapper	568816.Acin_1338	Phage tail sheath C-terminal domain	NA
UHGV-1343645_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1343645_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1343645_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1343645_18	PHROG	phrog_525	NA	unknown function
UHGV-1343645_18	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-1343645_18	Pfam	PF20765	NA	DUF6838
UHGV-1343645_18	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1343645_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1343645_19	UniRef90	UniRef90_UPI00195D7524	HK97 gp10 family phage protein	NA
UHGV-1343645_19	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1343645_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1343645_19	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1343645_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-1343645_20	UniRef90	UniRef90_UPI00195C85D4	phage head closure protein	NA
UHGV-1343645_20	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-1343645_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1343645_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1343645_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1343645_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1343645_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1343645_21	UniRef90	UniRef90_UPI001956A8AF	head-tail connector protein	NA
UHGV-1343645_21	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-1343645_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1343645_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1343645_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1343645_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1343645_22	UniRef90	UniRef90_UPI001959800B	phage major capsid protein	NA
UHGV-1343645_22	eggNOG-mapper	1232428.CAVO010000003_gene1009	phage major capsid protein, HK97 family	NA
UHGV-1343645_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1343645_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1343645_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1343645_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1343645_23	KOfam	K06904	NA	NA
UHGV-1343645_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1343645_23	UniRef90	UniRef90_UPI00195CEA1A	HK97 family phage prohead protease	NA
UHGV-1343645_23	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-1343645_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1343645_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1343645_23	COG	COG3740	Phage head maturation protease	NA
UHGV-1343645_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1343645_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1343645_24	UniRef90	UniRef90_UPI00195CD5BA	phage portal protein	NA
UHGV-1343645_24	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-1343645_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1343645_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1343645_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1343645_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1343645_25	UniRef90	UniRef90_UPI001959A792	terminase large subunit	NA
UHGV-1343645_25	eggNOG-mapper	1134413.ANNK01000054_gene2231	Terminase	NA
UHGV-1343645_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1343645_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1343645_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1343645_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1343645_26	PHROG	phrog_1066	NA	unknown function
UHGV-1343645_26	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1343645_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1343645_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1343645_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1343645_27	UniRef90	UniRef90_UPI0019588F92	HNH endonuclease	NA
UHGV-1343645_27	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-1343645_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1343645_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1343645_28	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-1343645_28	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1343645_28	UniRef90	UniRef90_A0A1I0V4L0	mRNA interferase YafQ	NA
UHGV-1343645_28	eggNOG-mapper	469616.FMAG_02543	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-1343645_28	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-1343645_28	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-1343645_28	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-1343645_28	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-1343645_29	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-1343645_29	PHROG	phrog_2737	NA	unknown function
UHGV-1343645_29	UniRef90	UniRef90_A0A346AWM0	Type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1343645_29	eggNOG-mapper	699246.HMPREF0868_0245	Addiction module antitoxin, RelB DinJ family	NA
UHGV-1343645_29	Pfam	PF04221	RelB antitoxin	RelB
UHGV-1343645_29	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1343645_29	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-1343645_29	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-1343645_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1343645_30	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-1343645_30	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-1343645_30	Pfam	PF07374	NA	DUF1492
UHGV-1343645_30	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1343645_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1343645_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1343645_33	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1343645_33	UniRef90	UniRef90_A0A412CHQ9	ParB domain-containing protein	NA
UHGV-1343645_33	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-1343645_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1343645_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1343645_34	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1343645_34	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1343645_34	UniRef90	UniRef90_A0A412CHM1	ParA family protein	NA
UHGV-1343645_34	eggNOG-mapper	1151292.QEW_0328	AAA domain	NA
UHGV-1343645_34	Pfam	PF13614	AAA domain	AAA_31
UHGV-1343645_34	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1343645_34	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1343645_37	KOfam	K03700	recU; recombination protein U	NA
UHGV-1343645_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1343645_37	UniRef90	UniRef90_UPI001D07224C	Holliday junction resolvase RecU	NA
UHGV-1343645_37	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1343645_37	Pfam	PF03838	Recombination protein U	RecU
UHGV-1343645_37	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1343645_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1343645_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1343645_38	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-1343645_38	Structural annotation	PF11726	NA	NA
UHGV-1343645_43	PHROG	phrog_21028	NA	unknown function
UHGV-1343645_43	Structural annotation	PF21441	NA	NA
UHGV-1343645_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1343645_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1343645_48	UniRef90	UniRef90_UPI000E4B0B24	helix-turn-helix domain-containing protein	NA
UHGV-1343645_48	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-1343645_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1343645_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1343645_48	Structural annotation	PF12844, MF_02017, NF007257, COG1476	NA	NA
UHGV-1343645_49	eggNOG-mapper	1111454.HMPREF1250_0286	NA	NA
UHGV-1343645_50	eggNOG-mapper	1121939.L861_17575	NA	NA
UHGV-1343645_51	PHROG	phrog_10743	NA	unknown function
UHGV-1343645_52	eggNOG-mapper	1433126.BN938_2445	NA	NA