UHGV-1344337

Genome information

vOTU vOTU-019905

Genome length 39,407 bps

CDS count 56

Completeness 54.99% (medium-quality)

geNomad score 0.9514

Prediction confidence Confident

Genome information
Genome ID	UHGV-1344337
vOTU ID	vOTU-019905
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341686_NODE_301_length_39407_cov_3.722937
BioSample	SAMN00715236
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	54.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9514
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.07
Jumbo phage	No

Genome content
Genome length	39,407 bps
GC content	49.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.03%
Average CDS length	630.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1344337_1	KOfam	K00812	aspB; aspartate aminotransferase [EC:2.6.1.1]	NA
UHGV-1344337_1	PHROG	phrog_5879	NA	unknown function
UHGV-1344337_1	UniRef90	UniRef90_H1D1K8	Aminotransferase	NA
UHGV-1344337_1	eggNOG-mapper	742743.HMPREF9453_01496	Beta-eliminating lyase	NA
UHGV-1344337_1	Pfam	PF00155	Aminotransferase class I and II	Aminotran_1_2
UHGV-1344337_1	NCBIFam	NF005744.0	pyridoxal phosphate-dependent aminotransferase	NA
UHGV-1344337_1	COG	COG0436	Aspartate/methionine/tyrosine aminotransferase	NA
UHGV-1344337_1	Structural annotation	PF00155, MF_01023, NF005744, COG1168	NA	NA
UHGV-1344337_3	PHROG	phrog_10797	NA	unknown function
UHGV-1344337_3	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-1344337_3	Structural annotation	PF20132	NA	NA
UHGV-1344337_4	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1344337_4	PHROG	phrog_3513	endolysin	lysis
UHGV-1344337_4	UniRef90	UniRef90_E4LA87	Putative muramidase-2	NA
UHGV-1344337_4	eggNOG-mapper	910314.HMPREF9220_0717	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1344337_4	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1344337_4	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1344337_4	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-1344337_5	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-1344337_5	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-1344337_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1344337_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1344337_6	eggNOG-mapper	1111454.HMPREF1250_0946	NA	NA
UHGV-1344337_7	KOfam	K06871	NA	NA
UHGV-1344337_7	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-1344337_7	UniRef90	UniRef90_A0A3A5R8L3	Radical SAM protein	NA
UHGV-1344337_7	eggNOG-mapper	568816.Acin_1896	radical SAM	NA
UHGV-1344337_7	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1344337_7	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-1344337_7	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-1344337_8	Structural annotation	PF02832	NA	NA
UHGV-1344337_9	Structural annotation	PF13403, NF038136	NA	NA
UHGV-1344337_11	KOfam	K06871	NA	NA
UHGV-1344337_11	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-1344337_11	UniRef90	UniRef90_A0A1H2ZMU0	Radical SAM core domain-containing protein	NA
UHGV-1344337_11	eggNOG-mapper	568816.Acin_1222	radical SAM	NA
UHGV-1344337_11	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-1344337_11	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1344337_11	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-1344337_11	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-1344337_11	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-1344337_12	eggNOG-mapper	568816.Acin_1223	alcohol dehydrogenase	NA
UHGV-1344337_12	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-1344337_13	PHROG	phrog_7032	tail fiber protein	tail
UHGV-1344337_13	eggNOG-mapper	568816.Acin_1902	alcohol dehydrogenase	NA
UHGV-1344337_13	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-1344337_14	Structural annotation	PF16640, NF011805, COG5456	NA	NA
UHGV-1344337_15	eggNOG-mapper	568816.Acin_1904	NA	NA
UHGV-1344337_16	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-1344337_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1344337_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1344337_17	UniRef90	UniRef90_A0A3A5R8N1	Phage tail protein	NA
UHGV-1344337_17	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-1344337_17	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-1344337_18	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1344337_18	UniRef90	UniRef90_UPI000D0F0EF4	tape measure protein	NA
UHGV-1344337_18	eggNOG-mapper	568816.Acin_1228	tape measure	NA
UHGV-1344337_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1344337_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1344337_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1344337_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1344337_19	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-1344337_20	Structural annotation	PF11836	NA	NA
UHGV-1344337_21	PHROG	phrog_1407	major tail protein	tail
UHGV-1344337_21	UniRef90	UniRef90_A0A3B9DV80	Phage major tail protein, TP901-1 family	NA
UHGV-1344337_21	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-1344337_21	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1344337_21	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1344337_21	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1344337_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1344337_22	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-1344337_22	Structural annotation	PF08873, COG5003	NA	NA
UHGV-1344337_23	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-1344337_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1344337_24	UniRef90	UniRef90_U7UGG7	Tail protein, HK97 family	NA
UHGV-1344337_24	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-1344337_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-1344337_25	UniRef90	UniRef90_A0A6N7W2V3	P22 coat protein-protein 5 domain protein	NA
UHGV-1344337_25	eggNOG-mapper	568816.Acin_1235	P22 coat protein-protein 5 domain protein	NA
UHGV-1344337_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1344337_26	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-1344337_26	eggNOG-mapper	568816.Acin_1236	NA	NA
UHGV-1344337_26	Structural annotation	PF06810	NA	NA
UHGV-1344337_28	PHROG	phrog_3675	NA	unknown function
UHGV-1344337_28	UniRef90	UniRef90_D2RJS3	YjcQ	NA
UHGV-1344337_28	eggNOG-mapper	591001.Acfer_0940	YjcQ protein	NA
UHGV-1344337_28	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1344337_28	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1344337_29	PHROG	phrog_34144	NA	unknown function
UHGV-1344337_29	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-1344337_29	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-1344337_29	Structural annotation	PF20111	NA	NA
UHGV-1344337_30	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1344337_30	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-1344337_30	eggNOG-mapper	568816.Acin_1239	NA	NA
UHGV-1344337_30	Structural annotation	PF21814	NA	NA
UHGV-1344337_31	PHROG	phrog_145	portal protein	head and packaging
UHGV-1344337_31	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-1344337_31	eggNOG-mapper	568816.Acin_1240	NA	NA
UHGV-1344337_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1344337_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1344337_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1344337_32	UniRef90	UniRef90_G4Q8N3	Phage terminase large subunit	NA
UHGV-1344337_32	eggNOG-mapper	568816.Acin_1241	Phage terminase large subunit	NA
UHGV-1344337_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1344337_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1344337_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1344337_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-1344337_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1344337_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1344337_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1344337_33	UniRef90	UniRef90_UPI00037BFAB1	terminase small subunit	NA
UHGV-1344337_33	eggNOG-mapper	526218.Sterm_1425	terminase small subunit	NA
UHGV-1344337_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1344337_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1344337_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1344337_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1344337_34	UniRef90	UniRef90_A0A329NRW1	NA	NA
UHGV-1344337_34	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-1344337_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1344337_37	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1344337_37	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-1344337_37	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-1344337_37	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1344337_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1344337_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1344337_38	UniRef90	UniRef90_A0A3D1QW50	Single-stranded DNA-binding protein	NA
UHGV-1344337_38	eggNOG-mapper	888060.HMPREF9081_1288	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1344337_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1344337_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1344337_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1344337_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1344337_38	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1344337_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1344337_40	eggNOG-mapper	797515.HMPREF9103_02423	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1344337_40	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-1344337_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1344337_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1344337_41	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-1344337_41	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1344337_41	Pfam	PF03837	RecT family	RecT
UHGV-1344337_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1344337_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1344337_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1344337_42	PHROG	phrog_34786	NA	unknown function
UHGV-1344337_42	UniRef90	UniRef90_E2ZAT2	Putative recombination and repair protein RecT	NA
UHGV-1344337_42	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1344337_42	Pfam	PF03837	RecT family	RecT
UHGV-1344337_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1344337_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1344337_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1344337_43	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-1344337_43	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-1344337_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1344337_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1344337_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1344337_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1344337_49	UniRef90	UniRef90_R6AF72	LysM domain-containing protein	NA
UHGV-1344337_49	eggNOG-mapper	1111454.HMPREF1250_1060	Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and or DivIC to the division machinery	NA
UHGV-1344337_49	Pfam	PF01476	LysM domain	LysM
UHGV-1344337_49	COG	COG1388	LysM repeat	NA
UHGV-1344337_49	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1344337_51	PHROG	phrog_7338	NA	unknown function
UHGV-1344337_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1344337_51	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1344337_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1344337_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1344337_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1344337_52	UniRef90	UniRef90_A0A1Q6R5B0	Bro-N domain-containing protein	NA
UHGV-1344337_52	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-1344337_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1344337_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1344337_52	COG	COG3617	Prophage antirepressor	NA
UHGV-1344337_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1344337_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1344337_53	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1344337_53	UniRef90	UniRef90_W0FH90	Transcriptional regulator, Cro/CI family	NA
UHGV-1344337_53	eggNOG-mapper	2002.JOEQ01000023_gene1166	Helix-turn-helix domain protein	NA
UHGV-1344337_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1344337_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1344337_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1344337_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1344337_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1344337_54	UniRef90	UniRef90_F9MML6	Peptidase S24-like protein	NA
UHGV-1344337_54	eggNOG-mapper	1000569.HMPREF1040_0220	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1344337_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1344337_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1344337_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1344337_54	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-1344337_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1344337_55	UniRef90	UniRef90_A0A7X2XHE0	Abi family protein	NA
UHGV-1344337_55	eggNOG-mapper	999423.HMPREF9161_01426	Abi-like protein	NA
UHGV-1344337_55	PADLOC	AbiD	AbiD	Abi
UHGV-1344337_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1344337_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1344337_55	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1344337_56	KOfam	K14059	int; integrase	NA
UHGV-1344337_56	PHROG	phrog_1	integrase	integration and excision
UHGV-1344337_56	UniRef90	UniRef90_A0A316LPC8	Site-specific integrase	NA
UHGV-1344337_56	eggNOG-mapper	1273103.NM10_02432	Phage integrase family	NA
UHGV-1344337_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1344337_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1344337_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1344337_56	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4973	NA	NA