UHGV-1344340

Genome information

Genome length 30,392 bps

CDS count 42

Completeness 72.68% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1344340
vOTU ID	vOTU-018987
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR341686_NODE_348_length_34850_cov_2.753125
BioSample	SAMN00715236
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.66
Jumbo phage	No

Genome content
Genome length	30,392 bps
GC content	44.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.51%
Average CDS length	675.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1344340_2	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1344340_2	UniRef90	UniRef90_A0A391NZN5	NA	NA
UHGV-1344340_2	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-1344340_2	Pfam	PF13643	NA	DUF4145
UHGV-1344340_2	Structural annotation	COG2250	NA	NA
UHGV-1344340_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1344340_12	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-1344340_12	Structural annotation	PF01446	NA	NA
UHGV-1344340_13	UniRef90	UniRef90_A0A373P426	RNase H type-1 domain-containing protein	NA
UHGV-1344340_13	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-1344340_13	COG	COG0328	Ribonuclease HI	NA
UHGV-1344340_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1344340_14	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1344340_15	PHROG	phrog_8470	NA	unknown function
UHGV-1344340_15	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-1344340_15	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-1344340_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1344340_15	Structural annotation	PF14284	NA	NA
UHGV-1344340_16	PHROG	phrog_15077	NA	unknown function
UHGV-1344340_16	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-1344340_16	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-1344340_16	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1344340_17	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-1344340_17	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1344340_17	Structural annotation	PF01726, MF_00732, NF041852, COG0640	NA	NA
UHGV-1344340_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1344340_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1344340_18	UniRef90	UniRef90_A0A373P5V7	Single-stranded DNA-binding protein	NA
UHGV-1344340_18	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-1344340_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1344340_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1344340_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1344340_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1344340_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1344340_19	PHROG	phrog_7566	NA	unknown function
UHGV-1344340_19	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1344340_20	Structural annotation	PF02796, NF040595	NA	NA
UHGV-1344340_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1344340_22	UniRef90	UniRef90_A0A416ZS25	NA	NA
UHGV-1344340_22	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-1344340_22	Pfam	PF07374	NA	DUF1492
UHGV-1344340_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1344340_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1344340_23	PHROG	phrog_32514	NA	unknown function
UHGV-1344340_23	eggNOG-mapper	873517.HMPREF1977_0749	NA	NA
UHGV-1344340_24	Structural annotation	PF17116	NA	NA
UHGV-1344340_25	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1344340_25	UniRef90	UniRef90_A0A373P435	Terminase	NA
UHGV-1344340_25	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1344340_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1344340_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1344340_25	COG	COG5484	NA	NA
UHGV-1344340_25	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1344340_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1344340_26	PHROG	phrog_10250	NA	unknown function
UHGV-1344340_26	UniRef90	UniRef90_UPI00156F5FD7	PBSX family phage terminase large subunit	NA
UHGV-1344340_26	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1344340_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1344340_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1344340_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1344340_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1344340_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1344340_27	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-1344340_27	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1344340_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1344340_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1344340_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1344340_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1344340_28	UniRef90	UniRef90_A0A1C5S475	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1344340_28	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1344340_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1344340_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1344340_28	COG	COG2369	NA	NA
UHGV-1344340_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1344340_29	PHROG	phrog_30750	NA	unknown function
UHGV-1344340_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1344340_30	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-1344340_30	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1344340_30	Pfam	PF14265	NA	DUF4355
UHGV-1344340_30	Structural annotation	PF14265	NA	NA
UHGV-1344340_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-1344340_31	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-1344340_31	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-1344340_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1344340_32	PHROG	phrog_2724	NA	unknown function
UHGV-1344340_32	UniRef90	UniRef90_A0A564VY53	Rho_N domain-containing protein	NA
UHGV-1344340_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1344340_32	Structural annotation	PF07498	NA	NA
UHGV-1344340_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1344340_33	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-1344340_33	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1344340_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1344340_33	Structural annotation	PF05135	NA	NA
UHGV-1344340_34	PHROG	phrog_2168	NA	unknown function
UHGV-1344340_34	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1344340_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1344340_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1344340_35	UniRef90	UniRef90_UPI001D01C150	HK97 gp10 family phage protein	NA
UHGV-1344340_35	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1344340_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1344340_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1344340_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1344340_36	PHROG	phrog_78	tail terminator	connector
UHGV-1344340_36	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-1344340_36	Structural annotation	PF05657	NA	NA
UHGV-1344340_37	PHROG	phrog_158	major tail protein	tail
UHGV-1344340_37	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-1344340_37	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1344340_37	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1344340_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1344340_38	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1344340_38	UniRef90	UniRef90_UPI0011DE12FE	NA	NA
UHGV-1344340_38	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-1344340_38	Structural annotation	PF19591	NA	NA
UHGV-1344340_40	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-1344340_40	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1344340_40	UniRef90	UniRef90_UPI00131A0471	transglycosylase SLT domain-containing protein	NA
UHGV-1344340_40	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-1344340_40	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1344340_40	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1344340_41	PHROG	phrog_1194	NA	unknown function
UHGV-1344340_41	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1344340_41	Pfam	PF20458	NA	DUF6711
UHGV-1344340_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1344340_42	PHROG	phrog_6616	tail protein	tail
UHGV-1344340_42	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-1344340_42	eggNOG-mapper	476272.RUMHYD_01992	NA	NA