UHGV-1344493

Genome information

Genome length 28,124 bps

CDS count 47

Completeness 92.22% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-1344493
vOTU ID	vOTU-072858
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Norman_98_NODE_1_length_28124_cov_31.769212
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.64
Jumbo phage	No

Genome content
Genome length	28,124 bps
GC content	54.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.08%
Average CDS length	548.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1344493_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1344493_1	UniRef90	UniRef90_UPI00073EFDD7	HNH endonuclease	NA
UHGV-1344493_1	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-1344493_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1344493_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1344493_1	Structural annotation	NF008448	NA	NA
UHGV-1344493_2	PHROG	phrog_14333	NA	unknown function
UHGV-1344493_2	UniRef90	UniRef90_A0A316S6R2	NA	NA
UHGV-1344493_2	eggNOG-mapper	718252.FP2_20250	NA	NA
UHGV-1344493_2	Pfam	PF13711	NA	DUF4160
UHGV-1344493_2	Structural annotation	PF13711	NA	NA
UHGV-1344493_3	UniRef90	UniRef90_UPI00073F9B9D	NA	NA
UHGV-1344493_3	eggNOG-mapper	1235792.C808_04470	NA	NA
UHGV-1344493_4	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1344493_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1344493_4	UniRef90	UniRef90_A0A8J6JDJ7	Helix-turn-helix transcriptional regulator	NA
UHGV-1344493_4	eggNOG-mapper	97138.C820_00746	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1344493_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1344493_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1344493_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1344493_5	PHROG	phrog_21498	NA	unknown function
UHGV-1344493_5	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-1344493_5	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-1344493_5	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1344493_5	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1344493_7	eggNOG-mapper	1507.HMPREF0262_00210	NA	NA
UHGV-1344493_7	Structural annotation	TIGR01636	NA	NA
UHGV-1344493_10	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1344493_10	eggNOG-mapper	1507.HMPREF0262_01169	NA	NA
UHGV-1344493_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1344493_12	UniRef90	UniRef90_UPI0009339F41	Lar family restriction alleviation protein	NA
UHGV-1344493_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1344493_12	Structural annotation	NF007260, COG3809	NA	NA
UHGV-1344493_13	PHROG	phrog_25245	NA	unknown function
UHGV-1344493_13	UniRef90	UniRef90_A0A7X1IBH8	3D domain-containing protein	NA
UHGV-1344493_13	eggNOG-mapper	1507.HMPREF0262_00437	3D domain	NA
UHGV-1344493_13	Pfam	PF06725	3D domain	3D
UHGV-1344493_13	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1344493_15	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1344493_15	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-1344493_15	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1344493_17	PHROG	phrog_15768	NA	unknown function
UHGV-1344493_17	UniRef90	UniRef90_A0A381FA99	NA	NA
UHGV-1344493_17	eggNOG-mapper	1125725.HMPREF1325_1315	NA	NA
UHGV-1344493_17	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-1344493_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1344493_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1344493_18	UniRef90	UniRef90_A0A7U9NQ54	Single-stranded DNA-binding protein	NA
UHGV-1344493_18	eggNOG-mapper	1507.HMPREF0262_00434	Single-stranded DNA-binding protein	NA
UHGV-1344493_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1344493_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1344493_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1344493_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1344493_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1344493_19	PHROG	phrog_7566	NA	unknown function
UHGV-1344493_19	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1344493_19	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-1344493_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1344493_20	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1344493_20	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1344493_20	Structural annotation	PF05772	NA	NA
UHGV-1344493_21	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1344493_21	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-1344493_21	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1344493_21	Pfam	PF06378	NA	DUF1071
UHGV-1344493_21	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1344493_23	UniRef90	UniRef90_UPI00073ED22A	helix-turn-helix transcriptional regulator	NA
UHGV-1344493_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1344493_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1344493_26	KOfam	K14059	int; integrase	NA
UHGV-1344493_26	PHROG	phrog_1	integrase	integration and excision
UHGV-1344493_26	UniRef90	UniRef90_A0A7U9NQ42	Site-specific recombinase, phage integrase family	NA
UHGV-1344493_26	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-1344493_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1344493_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1344493_26	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1344493_27	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1344493_27	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1344493_27	UniRef90	UniRef90_A0A7U9ICC4	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-1344493_27	eggNOG-mapper	1507.HMPREF0262_01196	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1344493_27	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1344493_27	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1344493_27	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1344493_28	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1344493_28	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1344493_28	UniRef90	UniRef90_A0A7U9IC61	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1344493_28	eggNOG-mapper	1507.HMPREF0262_01195	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1344493_28	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1344493_28	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1344493_28	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1344493_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1344493_29	PHROG	phrog_670	endolysin	lysis
UHGV-1344493_29	UniRef90	UniRef90_UPI00073F808C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1344493_29	eggNOG-mapper	1449126.JQKL01000046_gene2088	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1344493_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1344493_29	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1344493_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1344493_29	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA
UHGV-1344493_30	PHROG	phrog_13256	NA	unknown function
UHGV-1344493_30	eggNOG-mapper	641112.ACOK01000073_gene2912	NA	NA
UHGV-1344493_31	UniRef90	UniRef90_UPI000A7FB85C	hemolysin XhlA family protein	NA
UHGV-1344493_32	Structural annotation	PF07041	NA	NA
UHGV-1344493_33	PHROG	phrog_19280	NA	unknown function
UHGV-1344493_33	eggNOG-mapper	1507.HMPREF0262_01190	NA	NA
UHGV-1344493_33	COG	COG4675	Phage tail collar domain	NA
UHGV-1344493_33	Structural annotation	PF10651, NF032891, COG2372	NA	NA
UHGV-1344493_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1344493_34	UniRef90	UniRef90_UPI00073EA371	phage tail protein	NA
UHGV-1344493_34	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1344493_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1344493_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1344493_34	COG	COG4926	Phage-related protein	NA
UHGV-1344493_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1344493_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1344493_35	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-1344493_35	eggNOG-mapper	575605.ACQN01000003_gene628	NA	NA
UHGV-1344493_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-1344493_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1344493_36	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1344493_36	UniRef90	UniRef90_UPI00073E9FDF	phage tail tape measure protein	NA
UHGV-1344493_36	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-1344493_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1344493_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1344493_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1344493_36	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1344493_37	PHROG	phrog_709	NA	unknown function
UHGV-1344493_37	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-1344493_37	Structural annotation	PF11836	NA	NA
UHGV-1344493_38	PHROG	phrog_88	major tail protein	tail
UHGV-1344493_38	UniRef90	UniRef90_UPI00073ECEC3	phage tail protein	NA
UHGV-1344493_38	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-1344493_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1344493_38	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-1344493_39	UniRef90	UniRef90_A6XMK2	Aminopeptidase	NA
UHGV-1344493_39	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-1344493_39	Structural annotation	PF20765	NA	NA
UHGV-1344493_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1344493_40	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-1344493_40	eggNOG-mapper	665956.HMPREF1032_02261	NA	NA
UHGV-1344493_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1344493_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1344493_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1344493_41	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-1344493_41	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-1344493_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1344493_42	PHROG	phrog_5223	neck protein	connector
UHGV-1344493_42	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-1344493_42	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-1344493_42	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1344493_42	Structural annotation	TIGR01560	NA	NA
UHGV-1344493_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-1344493_44	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-1344493_44	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-1344493_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1344493_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1344493_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1344493_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1344493_45	KOfam	K06904	NA	NA
UHGV-1344493_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1344493_45	UniRef90	UniRef90_D1PND0	Phage prohead protease, HK97 family	NA
UHGV-1344493_45	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-1344493_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1344493_45	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1344493_45	COG	COG3740	Phage head maturation protease	NA
UHGV-1344493_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1344493_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-1344493_46	UniRef90	UniRef90_UPI00073E8ED5	phage portal protein	NA
UHGV-1344493_46	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-1344493_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1344493_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1344493_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1344493_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1344493_47	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-1344493_47	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-1344493_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1344493_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1344493_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1344493_47	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA