UHGV-1346035

Genome information

Genome length 36,402 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-1346035
vOTU ID	vOTU-081868
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Norman_10_NODE_13_length_36402_cov_129.060363
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.75
Jumbo phage	No

Genome content
Genome length	36,402 bps
GC content	38.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.89%
Average CDS length	606.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1346035_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1346035_1	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1346035_1	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1346035_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1346035_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1346035_2	UniRef90	UniRef90_A0A3E3JY25	Terminase large subunit	NA
UHGV-1346035_2	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1346035_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1346035_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1346035_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1346035_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1346035_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1346035_3	UniRef90	UniRef90_A0A3E3JY21	Phage portal protein	NA
UHGV-1346035_3	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1346035_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1346035_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1346035_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1346035_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1346035_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1346035_4	UniRef90	UniRef90_A0A3E3JYT5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1346035_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1346035_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1346035_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1346035_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1346035_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1346035_5	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-1346035_5	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1346035_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1346035_5	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1346035_7	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-1346035_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1346035_8	PHROG	phrog_78	tail terminator	connector
UHGV-1346035_8	Structural annotation	PF05657	NA	NA
UHGV-1346035_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1346035_9	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1346035_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1346035_9	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1346035_10	PHROG	phrog_88	major tail protein	tail
UHGV-1346035_10	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-1346035_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1346035_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1346035_13	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1346035_13	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-1346035_13	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-1346035_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1346035_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1346035_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1346035_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1346035_14	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-1346035_14	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-1346035_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1346035_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1346035_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1346035_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1346035_15	PHROG	phrog_13289	tail protein	tail
UHGV-1346035_15	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-1346035_15	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1346035_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1346035_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1346035_15	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1346035_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1346035_16	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1346035_16	PHROG	phrog_14030	NA	unknown function
UHGV-1346035_16	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-1346035_16	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1346035_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1346035_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1346035_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1346035_16	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1346035_17	PHROG	phrog_4188	NA	unknown function
UHGV-1346035_18	PHROG	phrog_25635	NA	unknown function
UHGV-1346035_18	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1346035_18	COG	COG4675	Phage tail collar domain	NA
UHGV-1346035_19	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1346035_20	PHROG	phrog_16164	NA	unknown function
UHGV-1346035_20	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-1346035_20	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1346035_21	PHROG	phrog_2310	NA	unknown function
UHGV-1346035_21	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-1346035_23	PHROG	phrog_443	holin	lysis
UHGV-1346035_23	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-1346035_23	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-1346035_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1346035_23	Structural annotation	PF16945	NA	NA
UHGV-1346035_24	KOfam	K24076	PGRP-LB; peptidoglycan-recognition protein LB [EC:3.5.1.28]	NA
UHGV-1346035_24	PHROG	phrog_7854	endolysin	lysis
UHGV-1346035_24	UniRef90	UniRef90_UPI001C3B2E98	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1346035_24	eggNOG-mapper	1235798.C817_04599	Ami_2	NA
UHGV-1346035_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1346035_24	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1346035_24	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1346035_24	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1346035_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1346035_26	UniRef90	UniRef90_S0KT36	AP2/ERF domain-containing protein	NA
UHGV-1346035_26	eggNOG-mapper	1139219.I569_00553	NA	NA
UHGV-1346035_26	AcrCatalog	cluster_5564	NA	NA
UHGV-1346035_26	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1346035_27	UniRef90	UniRef90_UPI00082E087A	helix-turn-helix domain-containing protein	NA
UHGV-1346035_27	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-1346035_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1346035_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1346035_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1346035_28	PHROG	phrog_18666	NA	unknown function
UHGV-1346035_29	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-1346035_30	UniRef90	UniRef90_UPI00129DE9D4	Arc family DNA-binding protein	NA
UHGV-1346035_30	Structural annotation	PF03869, NF010256	NA	NA
UHGV-1346035_31	Structural annotation	PF20795	NA	NA
UHGV-1346035_32	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1346035_32	UniRef90	UniRef90_F3AAN4	AP2/ERF domain-containing protein	NA
UHGV-1346035_32	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-1346035_32	Pfam	PF00847	AP2 domain	AP2
UHGV-1346035_32	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-1346035_33	KOfam	K14059	int; integrase	NA
UHGV-1346035_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1346035_33	UniRef90	UniRef90_A0A316S407	Tyr recombinase domain-containing protein	NA
UHGV-1346035_33	eggNOG-mapper	33035.JPJF01000091_gene89	Phage integrase family	NA
UHGV-1346035_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1346035_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1346035_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1346035_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1346035_34	PHROG	phrog_9336	NA	unknown function
UHGV-1346035_34	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-1346035_34	Pfam	PF14020	NA	DUF4236
UHGV-1346035_35	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-1346035_35	PHROG	phrog_7872	NA	unknown function
UHGV-1346035_35	UniRef90	UniRef90_A0A2N5PMK7	Ion_trans_2 domain-containing protein	NA
UHGV-1346035_35	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-1346035_35	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-1346035_35	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-1346035_35	Structural annotation	PF07885, NF040645	NA	NA
UHGV-1346035_36	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-1346035_36	UniRef90	UniRef90_UPI001AE6EB03	RNA polymerase sigma factor	NA
UHGV-1346035_36	eggNOG-mapper	1227349.C170_20895	ECF sigma factor	NA
UHGV-1346035_36	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1346035_36	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-1346035_36	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1346035_36	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1346035_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1346035_38	UniRef90	UniRef90_A0A0J9CF33	HTH cro/C1-type domain-containing protein	NA
UHGV-1346035_38	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-1346035_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1346035_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1346035_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1346035_42	PHROG	phrog_16447	NA	unknown function
UHGV-1346035_42	UniRef90	UniRef90_A0A8E3SN40	NA	NA
UHGV-1346035_42	eggNOG-mapper	1403390.U3PDZ3_9CAUD	NA	NA
UHGV-1346035_42	Pfam	PF10083	NA	DUF2321
UHGV-1346035_42	Structural annotation	PF10083, COG4306	NA	NA
UHGV-1346035_43	PHROG	phrog_14088	NA	unknown function
UHGV-1346035_43	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-1346035_43	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-1346035_45	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-1346035_45	Structural annotation	PF20063	NA	NA
UHGV-1346035_46	PHROG	phrog_30860	NA	unknown function
UHGV-1346035_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1346035_48	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-1346035_48	Structural annotation	PF01446	NA	NA
UHGV-1346035_49	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1346035_49	UniRef90	UniRef90_R6NIR0	RNase H type-1 domain-containing protein	NA
UHGV-1346035_49	eggNOG-mapper	1382304.JNIL01000001_gene2735	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1346035_49	Pfam	PF00075	RNase H	RNase_H
UHGV-1346035_49	COG	COG0328	Ribonuclease HI	NA
UHGV-1346035_49	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1346035_50	PHROG	phrog_7566	NA	unknown function
UHGV-1346035_50	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-1346035_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1346035_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1346035_51	UniRef90	UniRef90_F3AAS3	Single-stranded DNA-binding protein	NA
UHGV-1346035_51	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-1346035_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1346035_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1346035_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1346035_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1346035_51	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1346035_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1346035_53	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1346035_53	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1346035_53	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-1346035_53	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1346035_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1346035_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1346035_53	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1346035_54	PHROG	phrog_37410	NA	unknown function
UHGV-1346035_54	Structural annotation	PF08169, NF037951, COG1918	NA	NA
UHGV-1346035_56	PHROG	phrog_15198	NA	unknown function
UHGV-1346035_56	UniRef90	UniRef90_R6NRQ0	NA	NA