UHGV-1346352

Genome information

Genome length 22,185 bps

CDS count 26

Completeness 65.25% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-1346352
vOTU ID	vOTU-030237
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413614_NODE_859_length_22185_cov_7.586218
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.6
Jumbo phage	No

Genome content
Genome length	22,185 bps
GC content	42.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	92.63%
Average CDS length	793.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1346352_2	PHROG	phrog_35892	NA	unknown function
UHGV-1346352_2	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1346352_3	PHROG	phrog_1220	head protein	head and packaging
UHGV-1346352_3	Structural annotation	PF20747	NA	NA
UHGV-1346352_4	PHROG	phrog_538	minor tail protein	tail
UHGV-1346352_4	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1346352_4	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-1346352_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1346352_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1346352_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1346352_5	UniRef90	UniRef90_A0A3R6NW12	Phage tail family protein	NA
UHGV-1346352_5	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-1346352_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1346352_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1346352_5	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1346352_6	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1346352_6	PHROG	phrog_23464	NA	unknown function
UHGV-1346352_6	UniRef90	UniRef90_A0A6N2WBJ7	Chromosome partition protein Smc	NA
UHGV-1346352_6	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1346352_6	COG	COG5283	Phage-related tail protein	NA
UHGV-1346352_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1346352_8	PHROG	phrog_88	major tail protein	tail
UHGV-1346352_8	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-1346352_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1346352_8	COG	COG5492	NA	NA
UHGV-1346352_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1346352_9	Structural annotation	PF05657	NA	NA
UHGV-1346352_10	Structural annotation	TIGR01725	NA	NA
UHGV-1346352_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-1346352_11	UniRef90	UniRef90_A0A416HJI0	Head-tail adaptor protein	NA
UHGV-1346352_11	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1346352_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1346352_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1346352_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1346352_12	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-1346352_12	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-1346352_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1346352_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1346352_14	UniRef90	UniRef90_A0A3R6N229	Phage major capsid protein	NA
UHGV-1346352_14	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-1346352_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1346352_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1346352_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1346352_14	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1346352_15	KOfam	K06904	NA	NA
UHGV-1346352_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1346352_15	UniRef90	UniRef90_A0A3R6KIW5	HK97 family phage prohead protease	NA
UHGV-1346352_15	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-1346352_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1346352_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1346352_15	COG	COG3740	Phage head maturation protease	NA
UHGV-1346352_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1346352_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-1346352_16	UniRef90	UniRef90_A0A3R6NU07	Phage portal protein	NA
UHGV-1346352_16	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-1346352_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1346352_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1346352_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1346352_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1346352_17	UniRef90	UniRef90_A0A416HJK1	Terminase large subunit	NA
UHGV-1346352_17	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-1346352_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1346352_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1346352_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1346352_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1346352_18	PHROG	phrog_1066	NA	unknown function
UHGV-1346352_19	PHROG	phrog_19291	NA	unknown function
UHGV-1346352_19	eggNOG-mapper	397290.C810_01269	NA	NA
UHGV-1346352_19	Structural annotation	PF02191, COG3823	NA	NA
UHGV-1346352_21	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1346352_21	UniRef90	UniRef90_A0A416HJI3	HNH domain-containing protein	NA
UHGV-1346352_21	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-1346352_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1346352_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1346352_21	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1346352_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1346352_23	UniRef90	UniRef90_UPI001C80B796	transposase	NA
UHGV-1346352_23	eggNOG-mapper	86416.Clopa_0334	transposase activity	NA
UHGV-1346352_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1346352_23	Structural annotation	PF07141	NA	NA
UHGV-1346352_24	PHROG	phrog_14030	NA	unknown function
UHGV-1346352_24	UniRef90	UniRef90_A0A3R6PG27	SH3b domain-containing protein	NA
UHGV-1346352_24	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-1346352_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1346352_24	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-1346352_25	PHROG	phrog_1863	NA	unknown function
UHGV-1346352_25	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1346352_26	eggNOG-mapper	411470.RUMGNA_00254	NA	NA