UHGV-1346995

Genome information

Genome length 23,444 bps

CDS count 33

Completeness 60.58% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-1346995
vOTU ID	vOTU-033805
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413751_NODE_1140_length_23444_cov_2.252341
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.82
Jumbo phage	No

Genome content
Genome length	23,444 bps
GC content	46.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.27%
Average CDS length	667.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1346995_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1346995_1	PHROG	phrog_2649	endolysin	lysis
UHGV-1346995_1	UniRef90	UniRef90_A0A3R6JGE9	M15 family peptidase	NA
UHGV-1346995_1	eggNOG-mapper	1235802.C823_01946	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1346995_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1346995_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1346995_2	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1346995_2	PHROG	phrog_465	endolysin	lysis
UHGV-1346995_2	eggNOG-mapper	1304866.K413DRAFT_3058	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1346995_2	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1346995_3	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1346995_3	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1346995_3	UniRef90	UniRef90_A0A1C5PND8	Collagen triple helix repeat (20 copies)	NA
UHGV-1346995_3	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1346995_5	PHROG	phrog_1129	holin	lysis
UHGV-1346995_5	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-1346995_5	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1346995_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1346995_5	Structural annotation	PF06946	NA	NA
UHGV-1346995_6	PHROG	phrog_4105	NA	unknown function
UHGV-1346995_6	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1346995_7	PHROG	phrog_1382	NA	unknown function
UHGV-1346995_7	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-1346995_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1346995_7	Structural annotation	NF040910	NA	NA
UHGV-1346995_8	PHROG	phrog_1382	NA	unknown function
UHGV-1346995_8	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-1346995_8	eggNOG-mapper	1158610.UC3_02335	NA	NA
UHGV-1346995_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1346995_8	Structural annotation	NF040910	NA	NA
UHGV-1346995_10	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-1346995_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1346995_11	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-1346995_12	PHROG	phrog_18725	NA	unknown function
UHGV-1346995_12	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-1346995_13	PHROG	phrog_13879	NA	unknown function
UHGV-1346995_13	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1346995_13	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1346995_14	PHROG	phrog_1194	NA	unknown function
UHGV-1346995_14	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1346995_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1346995_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1346995_15	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-1346995_15	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-1346995_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1346995_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1346995_16	PHROG	phrog_8300	NA	unknown function
UHGV-1346995_16	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-1346995_16	Structural annotation	PF06854	NA	NA
UHGV-1346995_17	PHROG	phrog_820	major tail protein	tail
UHGV-1346995_17	eggNOG-mapper	483218.BACPEC_01149	domain, Protein	NA
UHGV-1346995_17	COG	COG5492	NA	NA
UHGV-1346995_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1346995_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1346995_18	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-1346995_18	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-1346995_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1346995_19	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1346995_20	PHROG	phrog_8710	NA	unknown function
UHGV-1346995_20	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-1346995_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1346995_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1346995_21	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-1346995_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-1346995_22	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-1346995_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-1346995_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1346995_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1346995_23	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-1346995_25	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1346995_25	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1346995_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1346995_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1346995_28	UniRef90	UniRef90_A0A417GP81	ADPrib_exo_Tox domain-containing protein	NA
UHGV-1346995_28	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-1346995_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1346995_28	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1346995_28	COG	COG2369	NA	NA
UHGV-1346995_28	Structural annotation	PF06152, PF01129, NF041404	NA	NA
UHGV-1346995_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-1346995_29	UniRef90	UniRef90_A0A3R6U7L6	Capsid protein	NA
UHGV-1346995_29	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1346995_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1346995_30	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-1346995_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1346995_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1346995_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1346995_31	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-1346995_31	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-1346995_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1346995_31	Structural annotation	PF04466, PF08459, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-1346995_32	UniRef90	UniRef90_J9GA06	Phage terminase small subunit	NA
UHGV-1346995_32	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-1346995_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1346995_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1346995_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1346995_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1346995_33	UniRef90	UniRef90_A0A844J191	Terminase small subunit	NA
UHGV-1346995_33	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-1346995_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1346995_33	COG	COG3728	Phage terminase, small subunit	NA