UHGV-1348130

Genome information

Genome length 23,187 bps

CDS count 35

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1348130
vOTU ID	vOTU-012501
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413729_NODE_631_length_23187_cov_3.185457
BioSample	SAMN00792074
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.63
Jumbo phage	No

Genome content
Genome length	23,187 bps
GC content	39.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.09%
Average CDS length	611.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1348130_2	PHROG	phrog_13256	NA	unknown function
UHGV-1348130_2	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-1348130_4	PHROG	phrog_372	tail protein	tail
UHGV-1348130_4	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-1348130_4	eggNOG-mapper	35344.A0A097PAT0_BPT12	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1348130_4	Pfam	PF05895	NA	DUF859
UHGV-1348130_4	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1348130_5	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1348130_5	PHROG	phrog_15074	NA	unknown function
UHGV-1348130_5	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-1348130_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1348130_5	COG	COG4926	Phage-related protein	NA
UHGV-1348130_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1348130_7	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-1348130_7	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-1348130_7	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-1348130_7	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1348130_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1348130_7	Structural annotation	MF_04138	NA	NA
UHGV-1348130_8	PHROG	phrog_2066	NA	unknown function
UHGV-1348130_8	eggNOG-mapper	1499683.CCFF01000017_gene2924	NA	NA
UHGV-1348130_9	UniRef90	UniRef90_A0A0P0NA82	NA	NA
UHGV-1348130_9	eggNOG-mapper	1123304.AQYA01000037_gene231	NA	NA
UHGV-1348130_9	Pfam	PF19591	NA	DUF6096
UHGV-1348130_9	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1348130_10	PHROG	phrog_158	major tail protein	tail
UHGV-1348130_10	UniRef90	UniRef90_UPI00177C0BE7	phage tail protein	NA
UHGV-1348130_10	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-1348130_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1348130_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1348130_11	Structural annotation	PF09646, COG3167	NA	NA
UHGV-1348130_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1348130_12	UniRef90	UniRef90_A0A136Q8F4	Phage protein, HK97 gp10 family	NA
UHGV-1348130_12	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1348130_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1348130_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1348130_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1348130_13	eggNOG-mapper	1280689.AUJC01000007_gene3314	NA	NA
UHGV-1348130_13	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1348130_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1348130_14	UniRef90	UniRef90_UPI00189A4AB6	phage head-tail connector protein	NA
UHGV-1348130_14	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-1348130_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1348130_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1348130_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-1348130_15	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1348130_15	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-1348130_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1348130_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1348130_16	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-1348130_16	eggNOG-mapper	1111134.HMPREF1253_1185	NA	NA
UHGV-1348130_16	Pfam	PF14265	NA	DUF4355
UHGV-1348130_16	Structural annotation	PF14265	NA	NA
UHGV-1348130_17	eggNOG-mapper	1514668.JOOA01000001_gene690	NA	NA
UHGV-1348130_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1348130_18	UniRef90	UniRef90_A0A6N3FUV3	Phage Mu protein F like protein	NA
UHGV-1348130_18	eggNOG-mapper	397287.C807_03710	Type VI secretion system effector, Hcp	NA
UHGV-1348130_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1348130_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1348130_18	COG	COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	NA
UHGV-1348130_18	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-1348130_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-1348130_19	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-1348130_19	eggNOG-mapper	642492.Clole_0968	Phage portal protein, SPP1 family	NA
UHGV-1348130_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1348130_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1348130_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1348130_22	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1348130_22	Structural annotation	PF13306	NA	NA
UHGV-1348130_24	Structural annotation	PF21226, TIGR04183, COG2372	NA	NA
UHGV-1348130_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1348130_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1348130_25	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-1348130_25	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-1348130_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1348130_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1348130_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1348130_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1348130_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1348130_26	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1348130_26	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1348130_26	Structural annotation	PF13022	NA	NA
UHGV-1348130_30	PHROG	phrog_15768	NA	unknown function
UHGV-1348130_30	Pfam	PF19808	NA	DUF6291
UHGV-1348130_30	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1348130_31	Structural annotation	PF18903	NA	NA
UHGV-1348130_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1348130_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1348130_35	UniRef90	UniRef90_UPI001AB048AE	tyrosine-type recombinase/integrase	NA
UHGV-1348130_35	eggNOG-mapper	1378168.N510_01454	Belongs to the 'phage' integrase family	NA
UHGV-1348130_35	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1348130_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1348130_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1348130_35	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA