UHGV-1348338

Genome information

Genome length 40,639 bps

CDS count 66

Completeness 90.54% (high-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-1348338
vOTU ID	vOTU-075152
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413741_NODE_330_length_40639_cov_3.011704
BioSample	SAMN00792086
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.98
Jumbo phage	No

Genome content
Genome length	40,639 bps
GC content	39.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.23%
Average CDS length	572.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1348338_2	PHROG	phrog_87	metallo-protease	other
UHGV-1348338_2	UniRef90	UniRef90_A0A7X3BWL3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1348338_2	eggNOG-mapper	864563.HMPREF9166_1289	IrrE N-terminal-like domain	NA
UHGV-1348338_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1348338_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1348338_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1348338_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1348338_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1348338_3	UniRef90	UniRef90_UPI001EE00BF6	helix-turn-helix transcriptional regulator	NA
UHGV-1348338_3	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-1348338_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1348338_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1348338_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1348338_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1348338_4	UniRef90	UniRef90_A0A2N2CXP6	XRE family transcriptional regulator	NA
UHGV-1348338_4	eggNOG-mapper	1048834.TC41_2516	Helix-turn-helix domain	NA
UHGV-1348338_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1348338_4	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-1348338_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1348338_7	Structural annotation	PF06531, TIGR04550, COG3422	NA	NA
UHGV-1348338_9	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1348338_9	eggNOG-mapper	632518.Calow_0810	Helix-turn-helix XRE-family like proteins	NA
UHGV-1348338_9	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1348338_9	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-1348338_11	UniRef90	UniRef90_A0A0J6WY89	LysM domain-containing protein	NA
UHGV-1348338_11	eggNOG-mapper	1280679.ATVX01000006_gene1529	LysM domain	NA
UHGV-1348338_11	Pfam	PF01476	LysM domain	LysM
UHGV-1348338_11	COG	COG1388	LysM repeat	NA
UHGV-1348338_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1348338_13	UniRef90	UniRef90_UPI000415F195	YqaJ viral recombinase family protein	NA
UHGV-1348338_13	eggNOG-mapper	546271.Selsp_1353	YqaJ viral recombinase family protein	NA
UHGV-1348338_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1348338_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1348338_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1348338_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1348338_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1348338_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1348338_14	UniRef90	UniRef90_A0A316S9I2	Recombinase RecT	NA
UHGV-1348338_14	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-1348338_14	Pfam	PF03837	RecT family	RecT
UHGV-1348338_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1348338_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1348338_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1348338_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1348338_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1348338_17	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-1348338_17	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1348338_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1348338_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1348338_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1348338_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1348338_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1348338_20	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1348338_20	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1348338_20	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1348338_20	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-1348338_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1348338_21	UniRef90	UniRef90_UPI001CD7177D	NA	NA
UHGV-1348338_21	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-1348338_21	Pfam	PF14359	NA	DUF4406
UHGV-1348338_21	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1348338_23	Structural annotation	PF18892	NA	NA
UHGV-1348338_25	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1348338_25	UniRef90	UniRef90_K9RSM4	Holliday junction resolvasome, endonuclease subunit	NA
UHGV-1348338_25	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1348338_25	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1348338_25	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1348338_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1348338_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1348338_26	UniRef90	UniRef90_UPI001032A0E4	dUTP diphosphatase	NA
UHGV-1348338_26	eggNOG-mapper	1042163.BRLA_c031330	dUTPase	NA
UHGV-1348338_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-1348338_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1348338_26	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1348338_27	PHROG	phrog_2776	NA	unknown function
UHGV-1348338_27	UniRef90	UniRef90_A0A516KNQ1	Putative tRNA endonuclease-like protein	NA
UHGV-1348338_27	eggNOG-mapper	663241.C9E2P0_9CAUD	NA	NA
UHGV-1348338_27	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1348338_29	eggNOG-mapper	520999.PROVALCAL_00764	NA	NA
UHGV-1348338_38	UniRef90	UniRef90_A0A412X6I8	Zinc ribbon domain-containing protein	NA
UHGV-1348338_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1348338_40	Structural annotation	PF18337	NA	NA
UHGV-1348338_41	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1348338_41	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1348338_42	PHROG	phrog_774	NA	unknown function
UHGV-1348338_42	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1348338_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1348338_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1348338_43	UniRef90	UniRef90_A0A6A8SGD1	Terminase small subunit	NA
UHGV-1348338_43	eggNOG-mapper	585503.HMPREF7545_1730	Terminase small subunit	NA
UHGV-1348338_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1348338_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1348338_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1348338_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1348338_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1348338_44	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1348338_44	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-1348338_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1348338_44	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1348338_44	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1348338_46	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1348338_46	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1348338_46	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1348338_46	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1348338_46	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1348338_47	PHROG	phrog_528	NA	unknown function
UHGV-1348338_47	UniRef90	UniRef90_A0A2D6RTY3	Endopeptidase	NA
UHGV-1348338_47	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1348338_48	PHROG	phrog_458	protease	other
UHGV-1348338_48	eggNOG-mapper	699218.HMPREF0889_0285	NA	NA
UHGV-1348338_49	PHROG	phrog_212	major head protein	head and packaging
UHGV-1348338_49	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-1348338_49	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-1348338_49	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1348338_49	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1348338_50	Structural annotation	PF21190	NA	NA
UHGV-1348338_51	Structural annotation	PF12949	NA	NA
UHGV-1348338_52	PHROG	phrog_394	tail protein	tail
UHGV-1348338_52	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-1348338_52	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-1348338_53	PHROG	phrog_376	tail protein	tail
UHGV-1348338_53	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1348338_53	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1348338_53	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1348338_53	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1348338_54	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1348338_54	UniRef90	UniRef90_A0A7X2XHB5	NA	NA
UHGV-1348338_54	eggNOG-mapper	202954.BBNK01000010_gene1461	NA	NA
UHGV-1348338_54	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-1348338_54	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1348338_55	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1348338_55	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1348338_55	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-1348338_56	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1348338_56	eggNOG-mapper	568816.Acin_1825	NA	NA
UHGV-1348338_57	PHROG	phrog_9880	NA	unknown function
UHGV-1348338_57	UniRef90	UniRef90_A0A412X674	MuF_C domain-containing protein	NA
UHGV-1348338_57	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1348338_57	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1348338_61	PHROG	phrog_1640	tail protein	tail
UHGV-1348338_61	eggNOG-mapper	1072685.IX83_07040	NA	NA
UHGV-1348338_62	PHROG	phrog_4757	NA	unknown function
UHGV-1348338_62	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-1348338_62	COG	COG4675	Phage tail collar domain	NA
UHGV-1348338_63	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1348338_64	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1348338_64	Structural annotation	PF14301	NA	NA