UHGV-1349757

Genome information

Genome length 31,187 bps

CDS count 51

Completeness 71.70% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-1349757
vOTU ID	vOTU-030574
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Ma_2019_SRR413633_NODE_594_length_31187_cov_2.698156
BioSample	SAMN00791978
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.67
Jumbo phage	No

Genome content
Genome length	31,187 bps
GC content	45.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	87.34%
Average CDS length	537.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1349757_1	KOfam	K14059	int; integrase	NA
UHGV-1349757_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1349757_1	UniRef90	UniRef90_D7GNY1	Phage integrase family	NA
UHGV-1349757_1	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-1349757_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1349757_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1349757_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1349757_2	PHROG	phrog_2695	NA	unknown function
UHGV-1349757_2	UniRef90	UniRef90_A0A1H0W108	SIR2-like domain-containing protein	NA
UHGV-1349757_2	eggNOG-mapper	877421.AUJT01000014_gene2876	SIR2-like domain	NA
UHGV-1349757_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-1349757_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-1349757_2	COG	COG4088	tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein)	NA
UHGV-1349757_2	Structural annotation	PF13289	NA	NA
UHGV-1349757_3	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1349757_3	UniRef90	UniRef90_A0A174RA95	SPP1 family phage head morphogenesis protein	NA
UHGV-1349757_3	eggNOG-mapper	610130.Closa_1392	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1349757_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1349757_3	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1349757_3	COG	COG2369	NA	NA
UHGV-1349757_5	PHROG	phrog_87	metallo-protease	other
UHGV-1349757_5	UniRef90	UniRef90_R5IRU3	Predicted Zn peptidase	NA
UHGV-1349757_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-1349757_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1349757_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1349757_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1349757_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1349757_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1349757_6	UniRef90	UniRef90_A0A1C5LRW3	Helix-turn-helix domain	NA
UHGV-1349757_6	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1349757_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1349757_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1349757_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1349757_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1349757_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1349757_7	UniRef90	UniRef90_A0A1C5LRT3	HTH-type transcriptional regulator immR	NA
UHGV-1349757_7	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-1349757_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1349757_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1349757_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1349757_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1349757_11	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1349757_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1349757_14	UniRef90	UniRef90_A0A174GZA7	Siphovirus Gp157	NA
UHGV-1349757_14	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-1349757_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1349757_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1349757_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1349757_17	UniRef90	UniRef90_A0A1I0KC28	AAA domain-containing protein	NA
UHGV-1349757_17	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-1349757_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-1349757_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1349757_18	PHROG	phrog_18107	NA	unknown function
UHGV-1349757_18	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-1349757_18	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-1349757_18	Pfam	PF05037	NA	DUF669
UHGV-1349757_18	Structural annotation	PF05037	NA	NA
UHGV-1349757_19	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1349757_19	PHROG	phrog_11992	NA	unknown function
UHGV-1349757_19	UniRef90	UniRef90_UPI001AA0E2ED	CHC2 zinc finger domain-containing protein	NA
UHGV-1349757_19	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-1349757_19	PADLOC	drt-UG29	DRT	DRT
UHGV-1349757_19	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1349757_19	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1349757_20	PHROG	phrog_11992	NA	unknown function
UHGV-1349757_20	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-1349757_20	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1349757_21	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1349757_21	UniRef90	UniRef90_A0A1C5LUB6	Superfamily II helicase and inactivated derivatives	NA
UHGV-1349757_21	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-1349757_21	Pfam	PF06048	NA	DUF927
UHGV-1349757_21	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1349757_21	COG	COG5519	NA	NA
UHGV-1349757_21	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1349757_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1349757_22	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-1349757_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1349757_22	COG	COG5519	NA	NA
UHGV-1349757_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1349757_23	UniRef90	UniRef90_A0A1C5LUG0	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1349757_23	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-1349757_23	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-1349757_23	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-1349757_24	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-1349757_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1349757_24	UniRef90	UniRef90_A0A373CZ08	DEAD/DEAH box helicase	NA
UHGV-1349757_24	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-1349757_24	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1349757_24	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1349757_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1349757_24	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1349757_24	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-1349757_26	UniRef90	UniRef90_R6SKK0	(ABCB) permease/ATP-binding protein efflux ABC transporter heavy metal transporter family	NA
UHGV-1349757_29	UniRef90	UniRef90_A0A415VS52	NA	NA
UHGV-1349757_29	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-1349757_29	Pfam	PF04448	NA	DUF551
UHGV-1349757_29	Structural annotation	PF04448	NA	NA
UHGV-1349757_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1349757_30	UniRef90	UniRef90_A0A373CVP9	RNA polymerase subunit sigma-70	NA
UHGV-1349757_30	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-1349757_30	Structural annotation	PF02996	NA	NA
UHGV-1349757_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1349757_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1349757_31	UniRef90	UniRef90_UPI001F191150	helix-turn-helix domain-containing protein	NA
UHGV-1349757_31	eggNOG-mapper	1280694.AUJQ01000012_gene1844	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1349757_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1349757_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1349757_31	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1349757_32	PHROG	phrog_1914	NA	unknown function
UHGV-1349757_32	UniRef90	UniRef90_UPI001F431565	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1349757_32	eggNOG-mapper	1410625.JHWK01000010_gene2005	IrrE N-terminal-like domain	NA
UHGV-1349757_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1349757_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1349757_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1349757_34	eggNOG-mapper	545243.BAEV01000004_gene840	NA	NA
UHGV-1349757_36	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1349757_36	UniRef90	UniRef90_A0A3D5L8R6	Terminase	NA
UHGV-1349757_36	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1349757_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1349757_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1349757_36	COG	COG5484	NA	NA
UHGV-1349757_36	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1349757_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1349757_37	PHROG	phrog_10250	NA	unknown function
UHGV-1349757_37	UniRef90	UniRef90_A0A3D5L980	PBSX family phage terminase large subunit	NA
UHGV-1349757_37	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-1349757_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1349757_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1349757_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1349757_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1349757_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1349757_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-1349757_38	UniRef90	UniRef90_A0A3D5L896	Phage portal protein	NA
UHGV-1349757_38	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-1349757_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1349757_38	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1349757_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1349757_39	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1349757_39	UniRef90	UniRef90_A0A3R6XFN9	Phage_Mu_F domain-containing protein	NA
UHGV-1349757_39	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-1349757_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1349757_39	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1349757_39	COG	COG2369	NA	NA
UHGV-1349757_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1349757_41	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1349757_41	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-1349757_41	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1349757_42	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-1349757_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1349757_43	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-1349757_43	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-1349757_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1349757_43	Structural annotation	PF06810	NA	NA
UHGV-1349757_44	PHROG	phrog_247	major head protein	head and packaging
UHGV-1349757_44	UniRef90	UniRef90_A0A3R6WDT3	Coat protein	NA
UHGV-1349757_44	eggNOG-mapper	1567014.A0A0A7RVZ1_9VIRU	NA	NA
UHGV-1349757_44	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1349757_44	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1349757_45	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1349757_45	PHROG	phrog_11157	NA	unknown function
UHGV-1349757_45	UniRef90	UniRef90_A0A417ABU7	Big_13 domain-containing protein	NA
UHGV-1349757_45	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-1349757_45	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1349757_45	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1349757_45	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1349757_45	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1349757_46	PHROG	phrog_32322	NA	unknown function
UHGV-1349757_46	UniRef90	UniRef90_UPI00164B2C36	PF13754 domain-containing protein	NA
UHGV-1349757_46	eggNOG-mapper	33035.JPJF01000023_gene3226	NA	NA
UHGV-1349757_46	Pfam	PF13754	NA	Big_3_4
UHGV-1349757_46	Structural annotation	PF13754	NA	NA
UHGV-1349757_47	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-1349757_47	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-1349757_49	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1349757_49	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-1349757_49	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-1349757_49	Structural annotation	PF05135	NA	NA
UHGV-1349757_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1349757_50	UniRef90	UniRef90_A0A3R7C409	HK97 gp10 family phage protein	NA
UHGV-1349757_50	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1349757_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1349757_50	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA