UHGV-1350135

Genome information

vOTU vOTU-062008

Genome length 37,718 bps

CDS count 57

Completeness 62.61% (medium-quality)

geNomad score 0.9629

Prediction confidence Confident

Genome information
Genome ID	UHGV-1350135
vOTU ID	vOTU-062008
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2019_SRR9161588_NODE_49_length_37718_cov_8.375329
BioSample	SAMN11893692
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	62.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9629
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.76
Jumbo phage	No

Genome content
Genome length	37,718 bps
GC content	30.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.60%
Average CDS length	587.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1350135_1	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1350135_1	UniRef90	UniRef90_C3DW28	SF3 helicase domain-containing protein	NA
UHGV-1350135_1	eggNOG-mapper	1220589.CD32_00520	DNA primase	NA
UHGV-1350135_1	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1350135_1	Structural annotation	PF02257, PF19263, NF011296	NA	NA
UHGV-1350135_2	PHROG	phrog_1558	NA	unknown function
UHGV-1350135_2	UniRef90	UniRef90_A0A6P1YDM0	Sigma70_r4_2 domain-containing protein	NA
UHGV-1350135_2	eggNOG-mapper	1262449.CP6013_3188	NA	NA
UHGV-1350135_2	Structural annotation	TIGR01637	NA	NA
UHGV-1350135_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1350135_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1350135_3	UniRef90	UniRef90_A0A4U9RDT2	Terminase small subunit	NA
UHGV-1350135_3	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-1350135_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1350135_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1350135_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1350135_4	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1350135_4	UniRef90	UniRef90_UPI000C083AB5	phage terminase large subunit	NA
UHGV-1350135_4	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-1350135_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1350135_4	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1350135_4	COG	COG5410	NA	NA
UHGV-1350135_4	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1350135_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-1350135_5	UniRef90	UniRef90_A0A355D4I5	Capsid protein	NA
UHGV-1350135_5	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1350135_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1350135_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1350135_6	UniRef90	UniRef90_UPI0006BBFCF3	EndoU domain-containing protein	NA
UHGV-1350135_6	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-1350135_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1350135_6	COG	COG2369	NA	NA
UHGV-1350135_6	Structural annotation	PF06152	NA	NA
UHGV-1350135_10	eggNOG-mapper	180332.JTGN01000008_gene4045	NA	NA
UHGV-1350135_10	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-1350135_11	PHROG	phrog_6782	tail fiber protein	tail
UHGV-1350135_11	eggNOG-mapper	1391647.AVSV01000022_gene2575	NA	NA
UHGV-1350135_13	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1350135_13	Structural annotation	NF040910	NA	NA
UHGV-1350135_14	PHROG	phrog_774	NA	unknown function
UHGV-1350135_14	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1350135_15	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-1350135_15	UniRef90	UniRef90_A0A0V8QIT3	Rha family transcriptional regulator	NA
UHGV-1350135_15	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-1350135_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1350135_15	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1350135_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1350135_15	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1350135_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1350135_16	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-1350135_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-1350135_17	UniRef90	UniRef90_UPI00115B1F01	capsid protein	NA
UHGV-1350135_17	eggNOG-mapper	394503.Ccel_3044	NA	NA
UHGV-1350135_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1350135_18	PHROG	phrog_1378	NA	unknown function
UHGV-1350135_18	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-1350135_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1350135_19	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-1350135_20	PHROG	phrog_8710	NA	unknown function
UHGV-1350135_20	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-1350135_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1350135_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1350135_21	UniRef90	UniRef90_UPI001B1FE87F	minor capsid protein	NA
UHGV-1350135_21	eggNOG-mapper	1151292.QEW_2428	Minor capsid protein	NA
UHGV-1350135_22	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1350135_22	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-1350135_22	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-1350135_22	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1350135_22	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1350135_23	PHROG	phrog_820	major tail protein	tail
UHGV-1350135_23	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-1350135_23	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-1350135_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1350135_24	PHROG	phrog_8300	NA	unknown function
UHGV-1350135_24	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-1350135_24	Structural annotation	PF06896	NA	NA
UHGV-1350135_25	PHROG	phrog_8355	NA	unknown function
UHGV-1350135_25	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-1350135_25	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-1350135_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1350135_26	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-1350135_26	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1350135_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1350135_26	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1350135_27	UniRef90	UniRef90_A0A1V4IQS0	TM2 domain protein	NA
UHGV-1350135_27	eggNOG-mapper	1499689.CCNN01000007_gene1692	TM2 domain	NA
UHGV-1350135_27	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1350135_27	COG	COG2314	NA	NA
UHGV-1350135_28	PHROG	phrog_1194	NA	unknown function
UHGV-1350135_28	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-1350135_28	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-1350135_28	Pfam	PF20458	NA	DUF6711
UHGV-1350135_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1350135_29	PHROG	phrog_6616	tail protein	tail
UHGV-1350135_29	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-1350135_29	COG	COG4926	Phage-related protein	NA
UHGV-1350135_29	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1350135_30	PHROG	phrog_17334	NA	unknown function
UHGV-1350135_30	eggNOG-mapper	189425.PGRAT_17530	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1350135_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1350135_32	PHROG	phrog_689	holin	lysis
UHGV-1350135_32	UniRef90	UniRef90_UPI0011787594	hemolysin XhlA family protein	NA
UHGV-1350135_32	eggNOG-mapper	1280692.AUJL01000004_gene828	Haemolysin XhlA	NA
UHGV-1350135_32	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1350135_33	PHROG	phrog_1129	holin	lysis
UHGV-1350135_33	UniRef90	UniRef90_UPI00189E7E54	phage holin family protein	NA
UHGV-1350135_33	eggNOG-mapper	1499683.CCFF01000005_gene84	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1350135_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1350135_33	Structural annotation	PF16079	NA	NA
UHGV-1350135_34	KOfam	K07273	acm; lysozyme	NA
UHGV-1350135_34	PHROG	phrog_6219	endolysin	lysis
UHGV-1350135_34	UniRef90	UniRef90_A0A7D6W3I9	Peptidoglycan-binding protein	NA
UHGV-1350135_34	eggNOG-mapper	1294142.CINTURNW_1048	family 25	NA
UHGV-1350135_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1350135_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1350135_34	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1350135_34	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-1350135_35	PHROG	phrog_2277	NA	unknown function
UHGV-1350135_35	eggNOG-mapper	999411.HMPREF1092_03191	NA	NA
UHGV-1350135_36	PHROG	phrog_9194	NA	unknown function
UHGV-1350135_36	eggNOG-mapper	1454004.AW11_00906	NA	NA
UHGV-1350135_38	KOfam	K14059	int; integrase	NA
UHGV-1350135_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1350135_38	UniRef90	UniRef90_A0A6B3ZK93	Site-specific integrase	NA
UHGV-1350135_38	eggNOG-mapper	931276.Cspa_c36800	Belongs to the 'phage' integrase family	NA
UHGV-1350135_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1350135_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1350135_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1350135_38	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1350135_39	PHROG	phrog_87	metallo-protease	other
UHGV-1350135_39	UniRef90	UniRef90_A0A1S8PX57	Metallopeptidase ImmA	NA
UHGV-1350135_39	eggNOG-mapper	1196322.A370_04238	IrrE N-terminal-like domain	NA
UHGV-1350135_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1350135_39	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1350135_39	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1350135_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1350135_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1350135_40	UniRef90	UniRef90_UPI0006C556D9	helix-turn-helix domain-containing protein	NA
UHGV-1350135_40	eggNOG-mapper	1280692.AUJL01000009_gene2970	Helix-turn-helix XRE-family like proteins	NA
UHGV-1350135_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1350135_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1350135_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1350135_40	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1350135_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1350135_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1350135_41	UniRef90	UniRef90_A0A1M5C858	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1350135_41	eggNOG-mapper	1031288.AXAA01000044_gene1980	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1350135_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1350135_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1350135_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1350135_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1350135_42	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1350135_42	UniRef90	UniRef90_A0A6B4HVK4	ORF6N domain-containing protein	NA
UHGV-1350135_42	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-1350135_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1350135_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1350135_42	Structural annotation	PF02498, PF10552, COG3617	NA	NA
UHGV-1350135_43	PHROG	phrog_7338	NA	unknown function
UHGV-1350135_43	UniRef90	UniRef90_A0A1M6NV78	DNA binding domain-containing protein, excisionase family	NA
UHGV-1350135_43	eggNOG-mapper	931276.Cspa_c26550	Excisionase from transposon Tn916	NA
UHGV-1350135_43	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1350135_43	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-1350135_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1350135_49	Structural annotation	PF10922	NA	NA
UHGV-1350135_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1350135_51	UniRef90	UniRef90_A0A1I2QRG2	Virus Gp157	NA
UHGV-1350135_51	eggNOG-mapper	1499683.CCFF01000014_gene3558	Siphovirus Gp157	NA
UHGV-1350135_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1350135_51	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1350135_52	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1350135_52	UniRef90	UniRef90_UPI0018987C03	ERF family protein	NA
UHGV-1350135_52	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-1350135_52	Pfam	PF04404	ERF superfamily	ERF
UHGV-1350135_52	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-1350135_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1350135_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1350135_53	UniRef90	UniRef90_UPI00189EF0F3	single-stranded DNA-binding protein	NA
UHGV-1350135_53	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-1350135_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1350135_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1350135_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1350135_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1350135_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1350135_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1350135_54	UniRef90	UniRef90_A0A2T5RJD5	ERCC4 domain-containing protein	NA
UHGV-1350135_54	eggNOG-mapper	1304866.K413DRAFT_4799	ERCC4 domain	NA
UHGV-1350135_54	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1350135_54	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-1350135_55	PHROG	phrog_7445	NA	unknown function
UHGV-1350135_55	UniRef90	UniRef90_UPI0018CEBBB0	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1350135_55	eggNOG-mapper	1395513.P343_08075	NA	NA
UHGV-1350135_55	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1350135_55	Structural annotation	PF14058	NA	NA
UHGV-1350135_56	PHROG	phrog_8470	NA	unknown function
UHGV-1350135_56	UniRef90	UniRef90_UPI001CF14225	PcfJ domain-containing protein	NA
UHGV-1350135_56	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-1350135_56	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1350135_56	Structural annotation	PF14284	NA	NA
UHGV-1350135_57	PHROG	phrog_15609	NA	unknown function
UHGV-1350135_57	eggNOG-mapper	1235835.C814_03425	NA	NA
UHGV-1350135_57	Pfam	PF11300	NA	DUF3102
UHGV-1350135_57	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1350135_57	Structural annotation	PF11300, PF07321, NF038070	NA	NA