UHGV-1350420

Genome information

Genome length 22,578 bps

CDS count 35

Completeness 53.65% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1350420
vOTU ID	vOTU-024507
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2018_SRR6128040_NODE_21_length_22578_cov_16.648803
BioSample	SAMN07646547
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.91
Jumbo phage	No

Genome content
Genome length	22,578 bps
GC content	49.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.98%
Average CDS length	590.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1350420_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1350420_1	UniRef90	UniRef90_UPI0018980930	Abi family protein	NA
UHGV-1350420_1	eggNOG-mapper	515620.EUBELI_20300	Abi-like protein	NA
UHGV-1350420_1	PADLOC	AbiD	AbiD	Abi
UHGV-1350420_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1350420_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1350420_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1350420_2	KOfam	K14059	int; integrase	NA
UHGV-1350420_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1350420_2	UniRef90	UniRef90_A0A1C5N3H1	Integrase	NA
UHGV-1350420_2	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1350420_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1350420_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1350420_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1350420_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1350420_3	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1350420_3	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1350420_4	Structural annotation	PF12510	NA	NA
UHGV-1350420_5	PHROG	phrog_20016	NA	unknown function
UHGV-1350420_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1350420_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1350420_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1350420_6	PHROG	phrog_16490	NA	unknown function
UHGV-1350420_6	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1350420_8	PHROG	phrog_21718	NA	unknown function
UHGV-1350420_8	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1350420_9	PHROG	phrog_3754	NA	unknown function
UHGV-1350420_9	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1350420_10	Structural annotation	PF16509, MF_00245, NF008895, COG2739	NA	NA
UHGV-1350420_11	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1350420_11	PHROG	phrog_435	endolysin	lysis
UHGV-1350420_11	UniRef90	UniRef90_A0A1C6B3W5	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1350420_11	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1350420_11	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1350420_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1350420_11	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1350420_13	PHROG	phrog_1129	holin	lysis
UHGV-1350420_13	UniRef90	UniRef90_A0A416QZD1	Enolase	NA
UHGV-1350420_13	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1350420_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1350420_13	Structural annotation	PF06946	NA	NA
UHGV-1350420_14	PHROG	phrog_937	hemolysin	other
UHGV-1350420_14	eggNOG-mapper	1232443.BAIA02000135_gene1405	NA	NA
UHGV-1350420_19	eggNOG-mapper	696281.Desru_1098	ATPase involved in DNA repair	NA
UHGV-1350420_19	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1350420_21	PHROG	phrog_13589	NA	unknown function
UHGV-1350420_21	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1350420_21	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1350420_22	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-1350420_22	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1350420_22	Structural annotation	PF10651, COG5456	NA	NA
UHGV-1350420_24	PHROG	phrog_32744	NA	unknown function
UHGV-1350420_24	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1350420_24	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1350420_25	PHROG	phrog_1194	NA	unknown function
UHGV-1350420_25	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-1350420_25	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1350420_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1350420_26	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-1350420_26	eggNOG-mapper	673837.D2IZU8_9CAUD	peptidoglycan catabolic process	NA
UHGV-1350420_27	PHROG	phrog_706	NA	unknown function
UHGV-1350420_27	UniRef90	UniRef90_A0A1C5N876	Bacteriophage Gp15 protein	NA
UHGV-1350420_27	eggNOG-mapper	999411.HMPREF1092_03313	Bacteriophage Gp15 protein	NA
UHGV-1350420_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1350420_27	Structural annotation	PF06854	NA	NA
UHGV-1350420_28	PHROG	phrog_11299	NA	unknown function
UHGV-1350420_28	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-1350420_28	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-1350420_28	Structural annotation	PF10666	NA	NA
UHGV-1350420_29	PHROG	phrog_3099	NA	unknown function
UHGV-1350420_29	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1350420_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1350420_30	PHROG	phrog_3707	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UHGV-1350420_30	UniRef90	UniRef90_A0A1C5N7Y8	Bacterial membrane flanked domain	NA
UHGV-1350420_30	eggNOG-mapper	469604.HMPREF0946_01104	Bacterial PH domain	NA
UHGV-1350420_30	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-1350420_30	COG	COG3428	NA	NA
UHGV-1350420_31	PHROG	phrog_3266	tail completion	connector
UHGV-1350420_31	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1350420_31	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1350420_31	Structural annotation	PF12691	NA	NA
UHGV-1350420_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1350420_32	UniRef90	UniRef90_A0A1C5N8K8	Minor capsid protein	NA
UHGV-1350420_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1350420_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1350420_32	Structural annotation	PF11114	NA	NA
UHGV-1350420_33	PHROG	phrog_3366	NA	unknown function
UHGV-1350420_33	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1350420_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1350420_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1350420_34	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1350420_35	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1350420_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA