UHGV-1350536

Genome information

Genome length 19,994 bps

CDS count 24

Completeness 51.40% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1350536
vOTU ID	vOTU-033183
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Reyes_2015_F37_T2_NODE_11_length_19994_cov_4.653445
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.87
Jumbo phage	No

Genome content
Genome length	19,994 bps
GC content	41.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	87.85%
Average CDS length	734.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1350536_1	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1350536_1	UniRef90	UniRef90_X8KCC7	AAA domain protein	NA
UHGV-1350536_1	eggNOG-mapper	936580.HMPREF1516_0740	AAA domain	NA
UHGV-1350536_1	Pfam	PF13479	AAA domain	AAA_24
UHGV-1350536_2	PHROG	phrog_1499	NA	unknown function
UHGV-1350536_2	UniRef90	UniRef90_A0A354Z1B3	Chromosome segregation protein SMC (Fragment)	NA
UHGV-1350536_2	eggNOG-mapper	1123511.KB905868_gene202	AAA domain	NA
UHGV-1350536_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1350536_3	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1350536_3	PHROG	phrog_1499	NA	unknown function
UHGV-1350536_3	UniRef90	UniRef90_D1YMB3	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-1350536_3	eggNOG-mapper	679192.HMPREF9013_1319	AAA ATPase domain	NA
UHGV-1350536_3	PADLOC	AAA_15	NA	NA
UHGV-1350536_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-1350536_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1350536_3	Structural annotation	PF13514, MF_00449, TIGR00634, COG0497	NA	NA
UHGV-1350536_4	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-1350536_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1350536_4	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-1350536_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1350536_5	Structural annotation	PF21291, MF_00535, NF041951, COG3655	NA	NA
UHGV-1350536_7	PHROG	phrog_6058	NA	unknown function
UHGV-1350536_7	Structural annotation	PF09035, NF033787	NA	NA
UHGV-1350536_8	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-1350536_8	UniRef90	UniRef90_A0A134CAA5	Hep/Hag repeat protein	NA
UHGV-1350536_8	eggNOG-mapper	1128111.HMPREF0870_01786	Hep Hag repeat protein	NA
UHGV-1350536_8	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-1350536_8	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-1350536_8	COG	COG5295	Autotransporter adhesin	NA
UHGV-1350536_8	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-1350536_10	UniRef90	UniRef90_W1V8T2	NA	NA
UHGV-1350536_10	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-1350536_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1350536_10	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1350536_11	UniRef90	UniRef90_S3AAF2	HTH cro/C1-type domain-containing protein	NA
UHGV-1350536_11	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-1350536_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1350536_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1350536_11	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1350536_12	PHROG	phrog_20936	NA	unknown function
UHGV-1350536_12	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-1350536_12	Structural annotation	PF06114	NA	NA
UHGV-1350536_13	Structural annotation	PF15028, COG5342	NA	NA
UHGV-1350536_14	KOfam	K14059	int; integrase	NA
UHGV-1350536_14	PHROG	phrog_1	integrase	integration and excision
UHGV-1350536_14	UniRef90	UniRef90_A0A380N5C5	Tyrosine recombinase XerS	NA
UHGV-1350536_14	eggNOG-mapper	1128111.HMPREF0870_01795	Belongs to the 'phage' integrase family	NA
UHGV-1350536_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1350536_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1350536_14	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1350536_15	PHROG	phrog_18860	NA	unknown function
UHGV-1350536_16	PHROG	phrog_5867	endolysin	lysis
UHGV-1350536_16	UniRef90	UniRef90_A0A496P7H7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1350536_16	eggNOG-mapper	1123288.SOV_2c01960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1350536_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1350536_16	Structural annotation	MF_04111	NA	NA
UHGV-1350536_17	PHROG	phrog_27828	NA	unknown function
UHGV-1350536_17	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-1350536_17	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-1350536_18	PHROG	phrog_22483	NA	unknown function
UHGV-1350536_18	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-1350536_18	Structural annotation	PF20622	NA	NA
UHGV-1350536_19	PHROG	phrog_5132	NA	unknown function
UHGV-1350536_19	eggNOG-mapper	546273.VEIDISOL_01076	Collagen triple helix repeat (20 copies)	NA
UHGV-1350536_19	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1350536_20	PHROG	phrog_1084	NA	unknown function
UHGV-1350536_20	Structural annotation	PF17813, NF038186	NA	NA
UHGV-1350536_21	KOfam	K06882	NA	NA
UHGV-1350536_21	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1350536_21	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-1350536_21	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-1350536_21	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1350536_21	Pfam	PF07495	Y_Y_Y domain	Y_Y_Y
UHGV-1350536_21	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-1350536_21	COG	COG1511	NA	NA
UHGV-1350536_21	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-1350536_22	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-1350536_22	PHROG	phrog_329	minor tail protein	tail
UHGV-1350536_22	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-1350536_22	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-1350536_22	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1350536_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1350536_22	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-1350536_23	PHROG	phrog_18	minor tail protein	tail
UHGV-1350536_23	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-1350536_23	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-1350536_23	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1350536_23	COG	COG4672	Phage tail protein	NA
UHGV-1350536_23	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-1350536_24	PHROG	phrog_22443	NA	unknown function
UHGV-1350536_24	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-1350536_24	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-1350536_24	COG	COG4913	NA	NA