UHGV-1351028

Genome information

Genome length 28,247 bps

CDS count 31

Completeness 79.71% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1351028
vOTU ID	vOTU-033861
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Zuo_2017_SRR5677800_NODE_94_length_28247_cov_128.877164
BioSample	SAMN06019315
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.4
Jumbo phage	No

Genome content
Genome length	28,247 bps
GC content	42.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.18%
Average CDS length	850.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1351028_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1351028_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1351028_1	UniRef90	UniRef90_A0A0Z8KEQ5	Putative transcriptional regulator	NA
UHGV-1351028_1	eggNOG-mapper	888049.HMPREF8578_0292	Peptidase S24-like	NA
UHGV-1351028_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1351028_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1351028_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1351028_1	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1351028_3	PHROG	phrog_9320	NA	unknown function
UHGV-1351028_3	UniRef90	UniRef90_A0A150NL19	NA	NA
UHGV-1351028_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1351028_4	PHROG	phrog_95	integrase	integration and excision
UHGV-1351028_4	UniRef90	UniRef90_A0A1F0A2K8	Integrase	NA
UHGV-1351028_4	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1351028_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1351028_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-1351028_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1351028_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1351028_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1351028_5	PHROG	phrog_1309	endolysin	lysis
UHGV-1351028_5	UniRef90	UniRef90_UPI0012443095	CHAP domain-containing protein	NA
UHGV-1351028_5	eggNOG-mapper	1051631.F8HGP2_9CAUD	peptidoglycan catabolic process	NA
UHGV-1351028_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-1351028_5	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1351028_5	Structural annotation	PF05257, TIGR02219, COG3942	NA	NA
UHGV-1351028_6	PHROG	phrog_33625	holin	lysis
UHGV-1351028_6	UniRef90	UniRef90_A0A501VHJ0	Phage holin	NA
UHGV-1351028_6	eggNOG-mapper	1297534.CAUJ01000005_gene166	Holin, phage phi LC3 family	NA
UHGV-1351028_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1351028_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1351028_6	COG	COG5546	NA	NA
UHGV-1351028_6	Structural annotation	COG5546	NA	NA
UHGV-1351028_7	PHROG	phrog_4257	NA	unknown function
UHGV-1351028_7	UniRef90	UniRef90_F9PZ52	Conserved domain protein	NA
UHGV-1351028_7	eggNOG-mapper	1035189.HMPREF9954_0324	NA	NA
UHGV-1351028_8	PHROG	phrog_1060	NA	unknown function
UHGV-1351028_8	UniRef90	UniRef90_A0A501VTB8	NA	NA
UHGV-1351028_8	eggNOG-mapper	768726.HMPREF9178_1050	NA	NA
UHGV-1351028_8	Pfam	PF07104	NA	DUF1366
UHGV-1351028_8	Structural annotation	PF07104	NA	NA
UHGV-1351028_9	PHROG	phrog_372	tail protein	tail
UHGV-1351028_9	UniRef90	UniRef90_A0A380KCA0	Phage structural protein	NA
UHGV-1351028_9	eggNOG-mapper	682370.C9W9J1_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1351028_9	Pfam	PF05895	NA	DUF859
UHGV-1351028_9	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1351028_10	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1351028_10	UniRef90	UniRef90_A0A501VLN8	Prophage_tail domain-containing protein	NA
UHGV-1351028_10	eggNOG-mapper	888049.HMPREF8578_0254	cellulase activity	NA
UHGV-1351028_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1351028_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1351028_10	COG	COG4926	Phage-related protein	NA
UHGV-1351028_10	Structural annotation	PF14594, PF21602, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1351028_11	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1351028_11	UniRef90	UniRef90_A0A501VG06	Phage tail protein	NA
UHGV-1351028_11	eggNOG-mapper	1123302.KB904167_gene528	Phage tail protein	NA
UHGV-1351028_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1351028_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1351028_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1351028_11	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1351028_12	PHROG	phrog_1204	tail protein	tail
UHGV-1351028_12	UniRef90	UniRef90_A0A4D6A7J5	Tail length tape-measure protein	NA
UHGV-1351028_12	eggNOG-mapper	1035189.HMPREF9954_0317	phage tail tape measure protein	NA
UHGV-1351028_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1351028_12	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1351028_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1351028_12	COG	COG5412	Phage-related protein	NA
UHGV-1351028_13	PHROG	phrog_706	NA	unknown function
UHGV-1351028_13	UniRef90	UniRef90_A0A0E4H2K9	Phage Gp15 protein	NA
UHGV-1351028_13	eggNOG-mapper	764291.STRUR_2093	Bacteriophage Gp15 protein	NA
UHGV-1351028_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1351028_13	Structural annotation	PF06854	NA	NA
UHGV-1351028_14	PHROG	phrog_1061	NA	unknown function
UHGV-1351028_14	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1351028_14	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1351028_14	Structural annotation	PF10666	NA	NA
UHGV-1351028_15	PHROG	phrog_820	major tail protein	tail
UHGV-1351028_15	UniRef90	UniRef90_A0A4D6A5Q6	Major tail shaft protein	NA
UHGV-1351028_15	eggNOG-mapper	1035189.HMPREF9954_0314	NA	NA
UHGV-1351028_15	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1351028_16	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1351028_16	UniRef90	UniRef90_A0A4D6A4N1	Minor capsid protein	NA
UHGV-1351028_16	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-1351028_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1351028_16	Structural annotation	PF12691	NA	NA
UHGV-1351028_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1351028_17	UniRef90	UniRef90_A0A501VQJ1	Capsid protein	NA
UHGV-1351028_17	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-1351028_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1351028_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1351028_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1351028_18	UniRef90	UniRef90_A0A4D6A4R2	Minor capsid protein	NA
UHGV-1351028_18	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1351028_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1351028_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1351028_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1351028_19	UniRef90	UniRef90_A0A501VK26	NA	NA
UHGV-1351028_19	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-1351028_20	PHROG	phrog_2910	NA	unknown function
UHGV-1351028_20	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-1351028_20	Structural annotation	PF20873	NA	NA
UHGV-1351028_21	UniRef90	UniRef90_A0A3G8F7I1	Rho_N domain-containing protein	NA
UHGV-1351028_21	Structural annotation	PF07498	NA	NA
UHGV-1351028_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-1351028_22	UniRef90	UniRef90_A0A4D6ASP8	Main capsid protein	NA
UHGV-1351028_22	eggNOG-mapper	537874.B3GW03_9CAUD	NA	NA
UHGV-1351028_22	Structural annotation	PF20911	NA	NA
UHGV-1351028_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1351028_23	UniRef90	UniRef90_A0A150NS01	NA	NA
UHGV-1351028_23	eggNOG-mapper	537874.B3GW02_9CAUD	NA	NA
UHGV-1351028_24	PHROG	phrog_903	NA	unknown function
UHGV-1351028_24	UniRef90	UniRef90_A0A0E4CTN7	NA	NA
UHGV-1351028_24	eggNOG-mapper	1214217.ALNF01000014_gene1378	NA	NA
UHGV-1351028_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1351028_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1351028_26	UniRef90	UniRef90_A0A501VHH4	Capsid protein	NA
UHGV-1351028_26	eggNOG-mapper	1035189.HMPREF9954_0304	Phage minor capsid protein 2	NA
UHGV-1351028_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1351028_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1351028_26	COG	COG2369	NA	NA
UHGV-1351028_26	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-1351028_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1351028_27	UniRef90	UniRef90_A0A501VQI2	Phage portal protein	NA
UHGV-1351028_27	eggNOG-mapper	764291.STRUR_2107	portal protein	NA
UHGV-1351028_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1351028_27	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1351028_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1351028_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1351028_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1351028_28	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-1351028_28	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-1351028_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1351028_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1351028_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1351028_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1351028_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1351028_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1351028_29	UniRef90	UniRef90_F9PZ29	Phage terminase, small subunit	NA
UHGV-1351028_29	eggNOG-mapper	1035189.HMPREF9954_0301	DNA packaging	NA
UHGV-1351028_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1351028_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1351028_29	COG	COG5484	NA	NA
UHGV-1351028_29	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1351028_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1351028_30	UniRef90	UniRef90_A0A501VLM0	NA	NA
UHGV-1351028_30	eggNOG-mapper	1214217.ALNF01000014_gene1384	NA	NA
UHGV-1351028_30	Pfam	PF07374	NA	DUF1492
UHGV-1351028_30	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1351028_31	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1351028_31	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1351028_31	UniRef90	UniRef90_A0A3P1V606	RNA-splicing ligase RtcB	NA
UHGV-1351028_31	eggNOG-mapper	1123309.AQYB01000019_gene883	tRNA-splicing ligase RtcB	NA
UHGV-1351028_31	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1351028_31	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1351028_31	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA