UHGV-1351923

Genome information

Genome length 32,762 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9651

Prediction confidence Confident

Genome information
Genome ID	UHGV-1351923
vOTU ID	vOTU-012296
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2019_SRR9161510_NODE_106_length_32762_cov_18.756902
BioSample	SAMN11893791
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9651
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.05
Jumbo phage	No

Genome content
Genome length	32,762 bps
GC content	54.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.69%
Average CDS length	657.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1351923_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1351923_1	UniRef90	UniRef90_UPI001874172A	P27 family phage terminase small subunit	NA
UHGV-1351923_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1351923_1	COG	COG5484	NA	NA
UHGV-1351923_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1351923_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1351923_2	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-1351923_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1351923_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1351923_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1351923_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1351923_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1351923_3	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-1351923_3	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-1351923_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1351923_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1351923_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1351923_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1351923_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1351923_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1351923_4	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-1351923_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1351923_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1351923_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1351923_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1351923_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1351923_5	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-1351923_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1351923_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1351923_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1351923_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1351923_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1351923_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1351923_6	PHROG	phrog_749	NA	unknown function
UHGV-1351923_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1351923_7	PHROG	phrog_19734	NA	unknown function
UHGV-1351923_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-1351923_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1351923_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1351923_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1351923_8	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-1351923_8	Structural annotation	PF05657	NA	NA
UHGV-1351923_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1351923_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1351923_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1351923_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1351923_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1351923_9	Structural annotation	TIGR01725	NA	NA
UHGV-1351923_10	PHROG	phrog_88	major tail protein	tail
UHGV-1351923_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-1351923_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1351923_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1351923_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1351923_11	Structural annotation	PF11836	NA	NA
UHGV-1351923_12	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1351923_12	UniRef90	UniRef90_A0A7X8V908	Phage tail protein	NA
UHGV-1351923_12	eggNOG-mapper	431943.CKL_2631	tape measure	NA
UHGV-1351923_12	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-1351923_12	Structural annotation	PF20155, COG5280	NA	NA
UHGV-1351923_13	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1351923_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1351923_14	PHROG	phrog_13879	NA	unknown function
UHGV-1351923_14	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1351923_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1351923_16	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1351923_16	PHROG	phrog_11157	NA	unknown function
UHGV-1351923_16	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1351923_16	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-1351923_16	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1351923_16	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1351923_16	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1351923_16	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1351923_17	PHROG	phrog_18725	NA	unknown function
UHGV-1351923_17	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1351923_17	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1351923_19	PHROG	phrog_9428	NA	unknown function
UHGV-1351923_19	UniRef90	UniRef90_A0A316LVP0	Serine/threonine protein kinase	NA
UHGV-1351923_19	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-1351923_20	PHROG	phrog_1129	holin	lysis
UHGV-1351923_20	UniRef90	UniRef90_A0A316LUD8	Enolase (Fragment)	NA
UHGV-1351923_20	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1351923_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1351923_20	Structural annotation	PF06946	NA	NA
UHGV-1351923_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1351923_22	PHROG	phrog_435	endolysin	lysis
UHGV-1351923_22	UniRef90	UniRef90_A0A316LY78	SLH domain-containing protein	NA
UHGV-1351923_22	eggNOG-mapper	1286171.EAL2_808p01900	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1351923_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1351923_22	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1351923_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1351923_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1351923_23	PHROG	phrog_95	integrase	integration and excision
UHGV-1351923_23	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-1351923_23	eggNOG-mapper	1235835.C814_03413	Resolvase, N terminal domain	NA
UHGV-1351923_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1351923_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-1351923_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1351923_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1351923_23	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1351923_24	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1351923_24	UniRef90	UniRef90_A0A6N8IGI7	Addiction module toxin, HicA family	NA
UHGV-1351923_24	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1351923_24	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1351923_24	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1351923_24	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1351923_25	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1351923_25	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1351923_25	UniRef90	UniRef90_A0A833MCF6	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1351923_25	eggNOG-mapper	1121422.AUMW01000002_gene2294	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1351923_25	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1351923_25	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1351923_25	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1351923_26	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1351923_26	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1351923_26	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-1351923_26	eggNOG-mapper	264732.Moth_1154	HELICc2	NA
UHGV-1351923_26	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1351923_26	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1351923_26	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1351923_26	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-1351923_26	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-1351923_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1351923_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1351923_27	UniRef90	UniRef90_A0A316TAV5	HTH cro/C1-type domain-containing protein	NA
UHGV-1351923_27	eggNOG-mapper	1235799.C818_03510	Peptidase S24-like	NA
UHGV-1351923_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1351923_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1351923_27	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1351923_27	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1351923_28	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-1351923_28	eggNOG-mapper	1145276.T479_16435	NA	NA
UHGV-1351923_28	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1351923_34	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1351923_34	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-1351923_34	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-1351923_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-1351923_34	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1351923_35	PHROG	phrog_6244	NA	unknown function
UHGV-1351923_35	UniRef90	UniRef90_UPI0019603B16	PD-(D/E)XK nuclease family protein	NA
UHGV-1351923_35	eggNOG-mapper	1121098.HMPREF1534_00619	NA	NA
UHGV-1351923_35	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1351923_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1351923_36	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-1351923_36	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-1351923_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1351923_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1351923_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1351923_37	UniRef90	UniRef90_A0A316LR42	Single-stranded DNA-binding protein	NA
UHGV-1351923_37	eggNOG-mapper	1120746.CCNL01000010_gene1363	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1351923_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1351923_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1351923_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1351923_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1351923_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1351923_38	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1351923_38	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1351923_38	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-1351923_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1351923_39	UniRef90	UniRef90_A0A3G6HM31	NA	NA
UHGV-1351923_39	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-1351923_39	Pfam	PF06356	NA	DUF1064
UHGV-1351923_39	Structural annotation	PF06356	NA	NA
UHGV-1351923_40	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1351923_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1351923_40	UniRef90	UniRef90_A0A396MCQ6	Adenylyl-sulfate reductase	NA
UHGV-1351923_40	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1351923_40	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1351923_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1351923_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1351923_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1351923_41	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1351923_41	UniRef90	UniRef90_A0A7C6NZ37	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1351923_41	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1351923_41	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1351923_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1351923_41	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1351923_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1351923_41	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1351923_42	PHROG	phrog_4433	NA	unknown function
UHGV-1351923_42	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1351923_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1351923_43	PHROG	phrog_874	NA	unknown function
UHGV-1351923_43	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-1351923_43	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-1351923_43	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1351923_44	PHROG	phrog_13999	NA	unknown function
UHGV-1351923_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1351923_45	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1351923_45	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1351923_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1351923_46	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1351923_46	eggNOG-mapper	768710.DesyoDRAFT_5229	NA	NA
UHGV-1351923_46	Structural annotation	PF07374, TIGR01636	NA	NA