UHGV-1352414

Genome information

Genome length 22,940 bps

CDS count 38

Completeness 65.08% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-1352414
vOTU ID	vOTU-030217
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2019_SRR9161502_NODE_1082_length_22940_cov_11.359974
BioSample	SAMN11893780
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.9
Jumbo phage	No

Genome content
Genome length	22,940 bps
GC content	60.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	92.05%
Average CDS length	561.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1352414_1	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1352414_1	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1352414_1	UniRef90	UniRef90_A0A096CPA9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1352414_1	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-1352414_1	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1352414_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1352414_1	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1352414_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-1352414_2	UniRef90	UniRef90_A0A1Y4RNE3	Phage portal protein	NA
UHGV-1352414_2	eggNOG-mapper	742738.HMPREF9460_00874	Phage portal protein	NA
UHGV-1352414_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1352414_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1352414_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1352414_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1352414_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1352414_4	UniRef90	UniRef90_A0A6N3FX18	Phage Terminase	NA
UHGV-1352414_4	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-1352414_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1352414_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1352414_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1352414_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1352414_5	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1352414_5	UniRef90	UniRef90_A0A6N3FW38	Phage terminase, small subunit	NA
UHGV-1352414_5	eggNOG-mapper	1234664.AMRO01000024_gene1803	Phage terminase, small subunit	NA
UHGV-1352414_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1352414_5	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1352414_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1352414_6	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1352414_6	UniRef90	UniRef90_UPI001031C755	HNH endonuclease	NA
UHGV-1352414_6	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-1352414_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1352414_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1352414_6	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1352414_7	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-1352414_7	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-1352414_7	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1352414_7	Structural annotation	PF14205, COG4416	NA	NA
UHGV-1352414_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1352414_8	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-1352414_8	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1352414_11	PHROG	phrog_38832	NA	unknown function
UHGV-1352414_11	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1352414_13	Pfam	PF04448	NA	DUF551
UHGV-1352414_14	PHROG	phrog_25732	NA	unknown function
UHGV-1352414_15	PHROG	phrog_22389	NA	unknown function
UHGV-1352414_15	Structural annotation	PF01402, COG4710	NA	NA
UHGV-1352414_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1352414_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1352414_16	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-1352414_16	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1352414_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1352414_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1352414_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1352414_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1352414_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1352414_18	PHROG	phrog_15609	NA	unknown function
UHGV-1352414_18	UniRef90	UniRef90_UPI001958A9B5	NA	NA
UHGV-1352414_18	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-1352414_18	Pfam	PF11300	NA	DUF3102
UHGV-1352414_18	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1352414_18	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1352414_19	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1352414_19	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1352414_19	UniRef90	UniRef90_A0A1Y4CFT6	AAA_31 domain-containing protein	NA
UHGV-1352414_19	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1352414_19	Pfam	PF13614	AAA domain	AAA_31
UHGV-1352414_19	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1352414_19	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1352414_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1352414_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1352414_20	UniRef90	UniRef90_A0A3A8Z521	DNA helicase	NA
UHGV-1352414_20	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1352414_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1352414_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1352414_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-1352414_20	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-1352414_21	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1352414_21	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-1352414_21	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-1352414_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1352414_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1352414_21	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-1352414_29	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1352414_29	UniRef90	UniRef90_A0A845R093	XRE family transcriptional regulator	NA
UHGV-1352414_29	eggNOG-mapper	1203606.HMPREF1526_00997	Helix-turn-helix XRE-family like proteins	NA
UHGV-1352414_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1352414_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1352414_29	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1352414_30	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1352414_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1352414_30	UniRef90	UniRef90_UPI00189B8222	helix-turn-helix domain-containing protein	NA
UHGV-1352414_30	eggNOG-mapper	1391647.AVSV01000039_gene1077	Helix-turn-helix XRE-family like proteins	NA
UHGV-1352414_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1352414_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1352414_30	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1352414_31	PHROG	phrog_87	metallo-protease	other
UHGV-1352414_31	UniRef90	UniRef90_UPI00195AE3BC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1352414_31	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-1352414_31	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1352414_31	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1352414_31	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1352414_32	PHROG	phrog_1847	NA	unknown function
UHGV-1352414_32	UniRef90	UniRef90_A0A1C5XXD7	T5orf172 domain	NA
UHGV-1352414_32	eggNOG-mapper	1121287.AUMU01000001_gene1311	T5orf172	NA
UHGV-1352414_32	Pfam	PF13250	NA	DUF4041
UHGV-1352414_32	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-1352414_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1352414_32	Structural annotation	PF02970, NF041454	NA	NA
UHGV-1352414_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1352414_33	PHROG	phrog_95	integrase	integration and excision
UHGV-1352414_33	UniRef90	UniRef90_UPI001F38D8FE	recombinase family protein	NA
UHGV-1352414_33	eggNOG-mapper	1121344.JHZO01000003_gene691	resolvase	NA
UHGV-1352414_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1352414_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-1352414_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1352414_33	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1352414_34	PHROG	phrog_21357	endolysin	lysis
UHGV-1352414_34	UniRef90	UniRef90_UPI00067EF636	CHAP domain-containing protein	NA
UHGV-1352414_34	eggNOG-mapper	1378168.N510_02471	NLP P60 protein	NA
UHGV-1352414_34	Pfam	PF05257	CHAP domain	CHAP
UHGV-1352414_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1352414_34	Structural annotation	PF00877, TIGR02594, COG0791	NA	NA
UHGV-1352414_35	PHROG	phrog_18218	NA	unknown function
UHGV-1352414_35	Structural annotation	PF06946	NA	NA
UHGV-1352414_36	UniRef90	UniRef90_A0A845RAD8	LapA family protein	NA
UHGV-1352414_36	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-1352414_37	PHROG	phrog_1863	NA	unknown function
UHGV-1352414_37	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-1352414_38	PHROG	phrog_27545	NA	unknown function
UHGV-1352414_38	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-1352414_38	eggNOG-mapper	1226322.HMPREF1545_00129	NA	NA
UHGV-1352414_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12