UHGV-1352808

Genome information

Genome length 22,552 bps

CDS count 34

Completeness 61.32% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1352808
vOTU ID	vOTU-033866
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Rampelli_SM_44_NODE_551_length_22552_cov_4.439125
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.33
Jumbo phage	No

Genome content
Genome length	22,552 bps
GC content	60.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.12%
Average CDS length	632.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1352808_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1352808_2	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1352808_2	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1352808_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1352808_4	PHROG	phrog_16490	NA	unknown function
UHGV-1352808_4	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1352808_7	Structural annotation	PF16509, MF_00245, NF008895, COG2739	NA	NA
UHGV-1352808_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1352808_8	PHROG	phrog_1794	amidase	lysis
UHGV-1352808_8	UniRef90	UniRef90_UPI001570B791	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1352808_8	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-1352808_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1352808_8	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1352808_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1352808_9	PHROG	phrog_443	holin	lysis
UHGV-1352808_9	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-1352808_9	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1352808_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1352808_9	Structural annotation	PF16945	NA	NA
UHGV-1352808_10	PHROG	phrog_937	hemolysin	other
UHGV-1352808_10	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1352808_12	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-1352808_12	Structural annotation	PF10618	NA	NA
UHGV-1352808_14	Pfam	PF19789	NA	DUF6273
UHGV-1352808_14	Structural annotation	PF19789	NA	NA
UHGV-1352808_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1352808_16	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1352808_16	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1352808_17	Structural annotation	PF10651	NA	NA
UHGV-1352808_19	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-1352808_20	PHROG	phrog_26795	NA	unknown function
UHGV-1352808_20	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1352808_20	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1352808_21	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1352808_21	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1352808_21	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1352808_21	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1352808_22	PHROG	phrog_33680	NA	unknown function
UHGV-1352808_22	UniRef90	UniRef90_A0A2Z4I560	Phage tail protein	NA
UHGV-1352808_22	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-1352808_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1352808_22	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1352808_24	Structural annotation	PF11836	NA	NA
UHGV-1352808_25	PHROG	phrog_88	major tail protein	tail
UHGV-1352808_25	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1352808_25	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1352808_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1352808_25	COG	COG5492	NA	NA
UHGV-1352808_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1352808_26	Structural annotation	TIGR01725	NA	NA
UHGV-1352808_27	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1352808_27	Structural annotation	PF05657	NA	NA
UHGV-1352808_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1352808_28	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-1352808_28	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1352808_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1352808_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1352808_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1352808_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1352808_29	PHROG	phrog_5223	neck protein	connector
UHGV-1352808_29	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-1352808_29	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-1352808_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-1352808_30	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1352808_30	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1352808_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1352808_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1352808_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1352808_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1352808_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1352808_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1352808_31	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1352808_31	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1352808_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1352808_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1352808_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1352808_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1352808_32	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-1352808_32	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1352808_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1352808_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1352808_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1352808_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1352808_33	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1352808_33	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1352808_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1352808_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1352808_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1352808_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1352808_34	PHROG	phrog_1066	NA	unknown function
UHGV-1352808_34	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1352808_34	Structural annotation	PF05119, TIGR01558	NA	NA