UHGV-1352883

Genome information

Genome length 25,028 bps

CDS count 34

Completeness 58.69% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-1352883
vOTU ID	vOTU-030720
vOTU representative	Yes
Source dataset	GVD
Original genome ID	SRR7892432_NODE_14_length_25028_cov_26.301446
BioSample	SAMN10080903
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.76
Jumbo phage	No

Genome content
Genome length	25,028 bps
GC content	52.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	96.93%
Average CDS length	717.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1352883_2	PHROG	phrog_36767	NA	unknown function
UHGV-1352883_2	UniRef90	UniRef90_UPI00067E7E25	NA	NA
UHGV-1352883_3	Structural annotation	PF18812, COG2929	NA	NA
UHGV-1352883_5	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-1352883_5	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1352883_5	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1352883_5	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-1352883_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1352883_6	PHROG	phrog_1794	amidase	lysis
UHGV-1352883_6	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1352883_6	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1352883_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1352883_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1352883_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1352883_7	PHROG	phrog_13256	NA	unknown function
UHGV-1352883_7	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-1352883_9	PHROG	phrog_937	hemolysin	other
UHGV-1352883_9	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1352883_10	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1352883_10	PHROG	phrog_7158	NA	unknown function
UHGV-1352883_10	UniRef90	UniRef90_UPI001C0D9A0E	metallophosphoesterase	NA
UHGV-1352883_10	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1352883_10	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1352883_10	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-1352883_11	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1352883_11	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1352883_12	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-1352883_16	PHROG	phrog_6616	tail protein	tail
UHGV-1352883_16	eggNOG-mapper	1122918.KB907248_gene4487	NA	NA
UHGV-1352883_16	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1352883_17	PHROG	phrog_1194	NA	unknown function
UHGV-1352883_17	UniRef90	UniRef90_G0IA27	NA	NA
UHGV-1352883_17	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-1352883_17	Pfam	PF20458	NA	DUF6711
UHGV-1352883_17	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1352883_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1352883_18	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1352883_18	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1352883_18	COG	COG1511	NA	NA
UHGV-1352883_18	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1352883_19	PHROG	phrog_706	NA	unknown function
UHGV-1352883_19	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1352883_19	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-1352883_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1352883_19	Structural annotation	PF06854	NA	NA
UHGV-1352883_20	PHROG	phrog_11299	NA	unknown function
UHGV-1352883_20	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1352883_20	Structural annotation	PF10666	NA	NA
UHGV-1352883_21	PHROG	phrog_3099	NA	unknown function
UHGV-1352883_21	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-1352883_22	PHROG	phrog_706	NA	unknown function
UHGV-1352883_22	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1352883_22	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-1352883_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1352883_22	Structural annotation	PF06854	NA	NA
UHGV-1352883_23	PHROG	phrog_11299	NA	unknown function
UHGV-1352883_23	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1352883_23	Structural annotation	PF10666	NA	NA
UHGV-1352883_24	PHROG	phrog_3099	NA	unknown function
UHGV-1352883_24	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-1352883_24	Structural annotation	TIGR02126	NA	NA
UHGV-1352883_25	PHROG	phrog_3266	tail completion	connector
UHGV-1352883_25	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1352883_25	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1352883_25	Structural annotation	PF12691	NA	NA
UHGV-1352883_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1352883_26	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1352883_26	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1352883_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1352883_26	Structural annotation	PF11114	NA	NA
UHGV-1352883_27	PHROG	phrog_3366	NA	unknown function
UHGV-1352883_27	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1352883_27	Pfam	PF20536	NA	DUF6751
UHGV-1352883_27	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1352883_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1352883_28	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1352883_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-1352883_29	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1352883_29	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1352883_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1352883_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1352883_30	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1352883_30	eggNOG-mapper	1423790.BN53_04440	Phage minor structural protein GP20	NA
UHGV-1352883_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1352883_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1352883_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1352883_31	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1352883_31	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1352883_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1352883_31	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1352883_31	COG	COG2369	NA	NA
UHGV-1352883_31	Structural annotation	PF06152	NA	NA
UHGV-1352883_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1352883_32	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1352883_32	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1352883_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1352883_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1352883_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1352883_33	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1352883_33	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1352883_33	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1352883_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1352883_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1352883_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1352883_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-1352883_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1352883_34	UniRef90	UniRef90_UPI00164C5C54	helix-turn-helix domain containing protein	NA
UHGV-1352883_34	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1352883_34	Structural annotation	PF13542	NA	NA