UHGV-1354469

Genome information

Genome length 37,775 bps

CDS count 52

Completeness 88.37% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1354469
vOTU ID	vOTU-016394
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Reyes_2015_F112_T2_NODE_6_length_37775_cov_8.278501
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.07
Jumbo phage	No

Genome content
Genome length	37,775 bps
GC content	55.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.64%
Average CDS length	653.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1354469_1	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1354469_1	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1354469_1	UniRef90	UniRef90_A0A5K1JD62	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1354469_1	eggNOG-mapper	999419.HMPREF1077_01720	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1354469_1	Pfam	PF00692	dUTPase	dUTPase
UHGV-1354469_1	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1354469_1	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1354469_1	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1354469_2	KOfam	K06940	NA	NA
UHGV-1354469_2	PHROG	phrog_32498	NA	unknown function
UHGV-1354469_2	UniRef90	UniRef90_A0A5K1JEP9	Flagellin N-methylase	NA
UHGV-1354469_2	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-1354469_2	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-1354469_3	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1354469_3	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-1354469_3	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1354469_6	PHROG	phrog_21525	NA	unknown function
UHGV-1354469_7	PHROG	phrog_6072	NA	unknown function
UHGV-1354469_14	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1354469_14	UniRef90	UniRef90_UPI0012DD8630	bifunctional DNA primase/polymerase	NA
UHGV-1354469_14	eggNOG-mapper	1232453.BAIF02000110_gene773	AAA domain	NA
UHGV-1354469_14	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1354469_14	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1354469_14	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1354469_14	COG	COG3598	RecA-family ATPase	NA
UHGV-1354469_14	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-1354469_15	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1354469_15	UniRef90	UniRef90_A0A359MQV2	ERCC4 domain-containing protein	NA
UHGV-1354469_15	eggNOG-mapper	742742.HMPREF9452_00432	NA	NA
UHGV-1354469_15	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1354469_16	PHROG	phrog_18107	NA	unknown function
UHGV-1354469_16	eggNOG-mapper	742742.HMPREF9452_00433	NA	NA
UHGV-1354469_16	Structural annotation	PF05037	NA	NA
UHGV-1354469_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1354469_17	UniRef90	UniRef90_A0A0M2NNJ8	NA	NA
UHGV-1354469_17	eggNOG-mapper	742742.HMPREF9452_00434	NA	NA
UHGV-1354469_17	Pfam	PF01443	Viral (Superfamily 1) RNA helicase	Viral_helicase1
UHGV-1354469_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1354469_18	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1354469_18	UniRef90	UniRef90_A0A5K1JDZ6	HNH endonuclease	NA
UHGV-1354469_18	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1354469_18	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1354469_18	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1354469_18	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1354469_18	Structural annotation	PF07453	NA	NA
UHGV-1354469_25	UniRef90	UniRef90_A0A3D1WRS4	HTH_17 domain-containing protein	NA
UHGV-1354469_25	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1354469_25	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-1354469_26	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1354469_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1354469_26	UniRef90	UniRef90_A0A5K1JFJ2	Helix-turn-helix domain protein	NA
UHGV-1354469_26	eggNOG-mapper	445975.COLSTE_01136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1354469_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1354469_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1354469_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1354469_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1354469_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1354469_27	UniRef90	UniRef90_A0A5K1JFK9	Antitoxin PezA	NA
UHGV-1354469_27	eggNOG-mapper	553184.ATORI0001_1208	Peptidase S24-like	NA
UHGV-1354469_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1354469_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1354469_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1354469_27	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1354469_29	KOfam	K14059	int; integrase	NA
UHGV-1354469_29	PHROG	phrog_1	integrase	integration and excision
UHGV-1354469_29	UniRef90	UniRef90_A0A5K1JI10	Phage integrase family protein	NA
UHGV-1354469_29	eggNOG-mapper	1235792.C808_01126	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1354469_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1354469_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1354469_29	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1354469_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1354469_31	PHROG	phrog_3393	endolysin	lysis
UHGV-1354469_31	UniRef90	UniRef90_A0A5K1J905	Bifunctional autolysin	NA
UHGV-1354469_31	eggNOG-mapper	51369.Q9MCC8_9CAUD	peptidoglycan catabolic process	NA
UHGV-1354469_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1354469_31	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1354469_32	eggNOG-mapper	1280681.AUJZ01000045_gene2512	NA	NA
UHGV-1354469_33	PHROG	phrog_4105	NA	unknown function
UHGV-1354469_33	UniRef90	UniRef90_A0A087A0L5	Phage minor structural protein	NA
UHGV-1354469_33	eggNOG-mapper	218140.BPSY_0948	NA	NA
UHGV-1354469_34	KOfam	K14059	int; integrase	NA
UHGV-1354469_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1354469_34	UniRef90	UniRef90_A0A5K1IJD6	Prophage phiRv2 integrase	NA
UHGV-1354469_34	eggNOG-mapper	445975.COLSTE_01092	Belongs to the 'phage' integrase family	NA
UHGV-1354469_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1354469_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1354469_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1354469_34	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-1354469_38	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-1354469_39	PHROG	phrog_1887	tail protein	tail
UHGV-1354469_39	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-1354469_39	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1354469_40	UniRef90	UniRef90_A0A5K1JBQ1	Fibronectin type-III domain-containing protein	NA
UHGV-1354469_40	eggNOG-mapper	521003.COLINT_02353	Fibronectin type 3 domain	NA
UHGV-1354469_40	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1354469_40	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-1354469_41	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1354469_41	UniRef90	UniRef90_A0A5K1JCK1	Chromosome partition protein Smc	NA
UHGV-1354469_41	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-1354469_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1354469_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1354469_41	COG	COG5283	Phage-related tail protein	NA
UHGV-1354469_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1354469_42	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1354469_44	PHROG	phrog_290	minor tail protein	tail
UHGV-1354469_44	UniRef90	UniRef90_UPI0012DF3876	phage tail tube protein	NA
UHGV-1354469_44	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1354469_44	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-1354469_45	Structural annotation	PF06141	NA	NA
UHGV-1354469_46	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1354469_46	Structural annotation	TIGR02215	NA	NA
UHGV-1354469_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-1354469_47	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-1354469_47	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-1354469_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1354469_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1354469_47	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1354469_48	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1354469_48	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1354469_48	UniRef90	UniRef90_A0A5K1JFC3	ATP-dependent Clp protease proteolytic subunit 1	NA
UHGV-1354469_48	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-1354469_48	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1354469_48	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1354469_48	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1354469_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-1354469_49	UniRef90	UniRef90_UPI0012DD2CF8	phage portal protein	NA
UHGV-1354469_49	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-1354469_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1354469_49	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1354469_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1354469_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1354469_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1354469_50	UniRef90	UniRef90_A0A5K1IZ70	Phage Terminase	NA
UHGV-1354469_50	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-1354469_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1354469_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1354469_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1354469_50	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1354469_51	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1354469_51	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-1354469_51	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1354469_51	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA