UHGV-1354664

Genome information

vOTU vOTU-020792

Genome length 44,827 bps

CDS count 66

Completeness 77.81% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1354664
vOTU ID	vOTU-020792
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2018_SRR6128097_NODE_29_length_44827_cov_24.696261
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.46
Jumbo phage	No

Genome content
Genome length	44,827 bps
GC content	48.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	82.12%
Average CDS length	559.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1354664_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1354664_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1354664_1	UniRef90	UniRef90_UPI001AD807B6	DNA cytosine methyltransferase	NA
UHGV-1354664_1	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1354664_1	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1354664_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1354664_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1354664_2	PHROG	phrog_4572	NA	unknown function
UHGV-1354664_2	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-1354664_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1354664_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1354664_3	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1354664_3	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1354664_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1354664_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1354664_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1354664_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1354664_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1354664_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1354664_4	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1354664_4	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1354664_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-1354664_4	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1354664_5	PHROG	phrog_38771	NA	unknown function
UHGV-1354664_6	eggNOG-mapper	272623.L157023	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1354664_6	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1354664_6	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-1354664_7	Structural annotation	PF14143	NA	NA
UHGV-1354664_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1354664_8	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1354664_10	Structural annotation	PF10922	NA	NA
UHGV-1354664_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1354664_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1354664_11	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-1354664_11	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-1354664_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1354664_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1354664_11	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1354664_12	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-1354664_12	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1354664_12	Structural annotation	TIGR03070	NA	NA
UHGV-1354664_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1354664_13	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-1354664_13	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1354664_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1354664_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1354664_15	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1354664_15	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1354664_16	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1354664_16	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1354664_16	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1354664_16	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1354664_16	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1354664_16	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1354664_16	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-1354664_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1354664_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1354664_18	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-1354664_18	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1354664_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-1354664_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1354664_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1354664_20	Structural annotation	PF07878	NA	NA
UHGV-1354664_21	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-1354664_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1354664_22	UniRef90	UniRef90_UPI00189966DA	phage antirepressor KilAC domain-containing protein	NA
UHGV-1354664_22	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-1354664_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1354664_22	COG	COG3617	Prophage antirepressor	NA
UHGV-1354664_22	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1354664_23	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1354664_24	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1354664_25	PHROG	phrog_16490	NA	unknown function
UHGV-1354664_25	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1354664_29	PHROG	phrog_15303	NA	unknown function
UHGV-1354664_31	KOfam	K07273	acm; lysozyme	NA
UHGV-1354664_31	PHROG	phrog_291	endolysin	lysis
UHGV-1354664_31	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1354664_31	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1354664_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1354664_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1354664_31	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1354664_32	PHROG	phrog_1382	NA	unknown function
UHGV-1354664_32	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-1354664_34	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-1354664_34	Structural annotation	MF_04106	NA	NA
UHGV-1354664_35	PHROG	phrog_18725	NA	unknown function
UHGV-1354664_35	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1354664_36	PHROG	phrog_13879	NA	unknown function
UHGV-1354664_36	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-1354664_36	Pfam	PF19789	NA	DUF6273
UHGV-1354664_36	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-1354664_37	PHROG	phrog_1194	NA	unknown function
UHGV-1354664_37	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-1354664_37	Pfam	PF20458	NA	DUF6711
UHGV-1354664_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1354664_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1354664_38	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1354664_38	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1354664_39	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1354664_40	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1354664_40	Pfam	PF16478	NA	DUF5055
UHGV-1354664_40	Structural annotation	PF16478	NA	NA
UHGV-1354664_41	PHROG	phrog_158	major tail protein	tail
UHGV-1354664_41	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-1354664_41	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-1354664_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1354664_42	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1354664_44	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1354664_45	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-1354664_45	Structural annotation	TIGR01560	NA	NA
UHGV-1354664_46	PHROG	phrog_29	major head protein	head and packaging
UHGV-1354664_46	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1354664_46	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-1354664_46	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1354664_46	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1354664_49	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-1354664_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-1354664_50	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1354664_50	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1354664_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1354664_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1354664_52	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1354664_52	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1354664_52	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-1354664_52	COG	COG5410	NA	NA
UHGV-1354664_52	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1354664_55	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1354664_55	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1354664_55	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-1354664_55	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-1354664_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1354664_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1354664_55	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-1354664_56	UniRef90	UniRef90_A0A374HMV1	HTH cro/C1-type domain-containing protein	NA
UHGV-1354664_58	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1354664_59	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1354664_59	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1354664_59	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-1354664_59	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-1354664_59	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1354664_59	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1354664_59	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1354664_59	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-1354664_61	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1354664_61	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-1354664_61	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-1354664_64	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1354664_64	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-1354664_64	COG	COG5377	Phage-related protein, predicted endonuclease	NA