UHGV-1355686

Genome information

Genome length 31,868 bps

CDS count 49

Completeness 90.49% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1355686
vOTU ID	vOTU-060290
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Zuo_2017_SRR5677773_NODE_93_length_31868_cov_66.981611
BioSample	SAMN06019339
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	37
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.48
Jumbo phage	No

Genome content
Genome length	31,868 bps
GC content	41.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.00%
Average CDS length	621.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1355686_1	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1355686_1	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1355686_1	UniRef90	UniRef90_F9PZ48	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1355686_1	eggNOG-mapper	1035189.HMPREF9954_0320	Collagen triple helix repeat (20 copies)	NA
UHGV-1355686_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1355686_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1355686_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1355686_1	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1355686_1	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-1355686_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1355686_2	UniRef90	UniRef90_A0A139RN81	Phage capsid and scaffold	NA
UHGV-1355686_2	eggNOG-mapper	1035189.HMPREF9954_0319	NA	NA
UHGV-1355686_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1355686_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1355686_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1355686_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1355686_3	PHROG	phrog_1204	tail protein	tail
UHGV-1355686_3	UniRef90	UniRef90_F9PZ45	Tape measure domain protein	NA
UHGV-1355686_3	eggNOG-mapper	1035189.HMPREF9954_0317	phage tail tape measure protein	NA
UHGV-1355686_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1355686_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1355686_3	COG	COG5412	Phage-related protein	NA
UHGV-1355686_4	PHROG	phrog_706	NA	unknown function
UHGV-1355686_4	UniRef90	UniRef90_F9PZ44	Bacteriophage Gp15 protein	NA
UHGV-1355686_4	eggNOG-mapper	1035189.HMPREF9954_0316	Bacteriophage Gp15 protein	NA
UHGV-1355686_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1355686_4	Structural annotation	PF06854	NA	NA
UHGV-1355686_5	PHROG	phrog_1061	NA	unknown function
UHGV-1355686_5	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1355686_5	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-1355686_5	Structural annotation	PF10666	NA	NA
UHGV-1355686_6	PHROG	phrog_820	major tail protein	tail
UHGV-1355686_6	UniRef90	UniRef90_A0A1X1KL86	Phage tail protein	NA
UHGV-1355686_6	eggNOG-mapper	1035189.HMPREF9954_0314	NA	NA
UHGV-1355686_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1355686_7	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1355686_7	UniRef90	UniRef90_A0A139RN84	Phage minor capsid protein	NA
UHGV-1355686_7	eggNOG-mapper	764299.STRIC_2534	Minor capsid protein from bacteriophage	NA
UHGV-1355686_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1355686_7	Structural annotation	PF12691	NA	NA
UHGV-1355686_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1355686_8	UniRef90	UniRef90_F9PZ40	Minor capsid	NA
UHGV-1355686_8	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-1355686_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1355686_8	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1355686_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1355686_9	UniRef90	UniRef90_F9PZ39	Phage protein Gp9	NA
UHGV-1355686_9	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-1355686_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1355686_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1355686_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1355686_10	UniRef90	UniRef90_A0A380KBA2	NA	NA
UHGV-1355686_10	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-1355686_11	PHROG	phrog_2910	NA	unknown function
UHGV-1355686_11	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-1355686_11	Structural annotation	PF20873	NA	NA
UHGV-1355686_12	PHROG	phrog_10018	NA	unknown function
UHGV-1355686_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-1355686_13	UniRef90	UniRef90_A0A1X1KL37	N4-gp56 family major capsid protein	NA
UHGV-1355686_13	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-1355686_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1355686_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1355686_14	UniRef90	UniRef90_A0A1F0C2D9	Scaffolding protein	NA
UHGV-1355686_14	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1355686_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1355686_14	Structural annotation	PF06810	NA	NA
UHGV-1355686_15	PHROG	phrog_15041	NA	unknown function
UHGV-1355686_15	UniRef90	UniRef90_A0A150NRY7	Isoleucyl-tRNA synthetase	NA
UHGV-1355686_15	eggNOG-mapper	1095737.HMPREF1110_0926	NA	NA
UHGV-1355686_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1355686_16	UniRef90	UniRef90_A0A4U9Z0J8	Phage minor capsid 2 family protein	NA
UHGV-1355686_16	eggNOG-mapper	1035189.HMPREF9954_0304	Phage minor capsid protein 2	NA
UHGV-1355686_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1355686_16	COG	COG2369	NA	NA
UHGV-1355686_16	Structural annotation	PF06152, PF15529	NA	NA
UHGV-1355686_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-1355686_18	UniRef90	UniRef90_F9PZ31	Phage portal protein gp6-like protein	NA
UHGV-1355686_18	eggNOG-mapper	1035189.HMPREF9954_0303	portal protein	NA
UHGV-1355686_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1355686_18	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1355686_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1355686_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1355686_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1355686_19	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-1355686_19	eggNOG-mapper	1035189.HMPREF9954_0302	Terminase-like family	NA
UHGV-1355686_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1355686_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1355686_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1355686_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1355686_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1355686_20	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1355686_20	UniRef90	UniRef90_F9PZ29	Phage terminase, small subunit	NA
UHGV-1355686_20	eggNOG-mapper	1035189.HMPREF9954_0301	DNA packaging	NA
UHGV-1355686_20	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1355686_20	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1355686_20	COG	COG5484	NA	NA
UHGV-1355686_20	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1355686_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1355686_21	UniRef90	UniRef90_UPI000A107461	NA	NA
UHGV-1355686_21	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-1355686_21	Pfam	PF07374	NA	DUF1492
UHGV-1355686_21	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1355686_22	PHROG	phrog_4455	NA	unknown function
UHGV-1355686_22	UniRef90	UniRef90_A0A4J2CRE4	NA	NA
UHGV-1355686_23	PHROG	phrog_98	NA	unknown function
UHGV-1355686_23	UniRef90	UniRef90_F9PZ26	TIGR01671 family protein	NA
UHGV-1355686_23	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-1355686_23	Pfam	PF09643	YopX protein	YopX
UHGV-1355686_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1355686_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1355686_24	PHROG	phrog_884	NA	unknown function
UHGV-1355686_24	UniRef90	UniRef90_Q7Y4J7	Gp27	NA
UHGV-1355686_24	eggNOG-mapper	768726.HMPREF9178_1075	NA	NA
UHGV-1355686_24	Pfam	PF07116	NA	DUF1372
UHGV-1355686_24	Structural annotation	PF07116, COG3585	NA	NA
UHGV-1355686_25	PHROG	phrog_17529	NA	unknown function
UHGV-1355686_25	UniRef90	UniRef90_Q7Y4J4	Gp30	NA
UHGV-1355686_25	eggNOG-mapper	585203.SMSK564_1294	SPFH domain / Band 7 family	NA
UHGV-1355686_25	AcrCatalog	cluster_31176	NA	NA
UHGV-1355686_25	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1355686_26	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1355686_26	UniRef90	UniRef90_A0A0T8NPR6	NA	NA
UHGV-1355686_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1355686_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1355686_27	UniRef90	UniRef90_A0A1F0A5L2	Endodeoxyribonuclease RusA	NA
UHGV-1355686_27	eggNOG-mapper	1035189.HMPREF9954_0297	holliday junction resolvase	NA
UHGV-1355686_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1355686_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1355686_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1355686_28	PHROG	phrog_1341	NA	unknown function
UHGV-1355686_28	UniRef90	UniRef90_A0A0B7LCM7	NA	NA
UHGV-1355686_28	eggNOG-mapper	997830.HMPREF1124_0584	NA	NA
UHGV-1355686_29	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-1355686_29	UniRef90	UniRef90_A0A7G1JQI7	DNA methyltransferase	NA
UHGV-1355686_29	eggNOG-mapper	1035189.HMPREF9954_0294	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1355686_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1355686_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1355686_29	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1355686_30	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1355686_30	UniRef90	UniRef90_A0A4V0JWN2	Methyltransferase	NA
UHGV-1355686_30	eggNOG-mapper	1054460.SPPN_00315	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1355686_30	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-1355686_30	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1355686_30	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1355686_30	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1355686_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1355686_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1355686_31	UniRef90	UniRef90_F9PZ21	Single-stranded DNA-binding protein	NA
UHGV-1355686_31	eggNOG-mapper	1035189.HMPREF9954_0293	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1355686_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1355686_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1355686_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1355686_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1355686_31	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1355686_32	PHROG	phrog_5262	NA	unknown function
UHGV-1355686_32	UniRef90	UniRef90_A0A380KAS2	NA	NA
UHGV-1355686_33	PHROG	phrog_9305	NA	unknown function
UHGV-1355686_33	UniRef90	UniRef90_A0A0T8LUA6	Sporulation protein Cse60	NA
UHGV-1355686_34	PHROG	phrog_4027	NA	unknown function
UHGV-1355686_35	PHROG	phrog_8210	NA	unknown function
UHGV-1355686_36	PHROG	phrog_674	NA	unknown function
UHGV-1355686_36	UniRef90	UniRef90_A0A141E008	NA	NA
UHGV-1355686_36	eggNOG-mapper	1035189.HMPREF9954_0291	NA	NA
UHGV-1355686_36	Pfam	PF07083	NA	DUF1351
UHGV-1355686_36	Structural annotation	PF07083	NA	NA
UHGV-1355686_37	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1355686_37	UniRef90	UniRef90_A0A4J1VAW5	Phage recombination protein Bet	NA
UHGV-1355686_37	eggNOG-mapper	1035189.HMPREF9954_0290	RecT family	NA
UHGV-1355686_37	Pfam	PF03837	RecT family	RecT
UHGV-1355686_37	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1355686_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1355686_37	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1355686_38	PHROG	phrog_20706	NA	unknown function
UHGV-1355686_39	PHROG	phrog_4614	NA	unknown function
UHGV-1355686_40	PHROG	phrog_8196	NA	unknown function
UHGV-1355686_41	PHROG	phrog_3819	NA	unknown function
UHGV-1355686_42	PHROG	phrog_1456	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1355686_42	UniRef90	UniRef90_A0A0T8K5V9	Phage replication protein	NA
UHGV-1355686_42	eggNOG-mapper	1035189.HMPREF9954_0287	NA	NA
UHGV-1355686_42	Structural annotation	PF04703, MF_01909, NF040939, COG3355	NA	NA
UHGV-1355686_43	PHROG	phrog_3624	NA	unknown function
UHGV-1355686_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1355686_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1355686_44	UniRef90	UniRef90_A0A3R9MG14	Phage antirepressor protein KilAC domain protein	NA
UHGV-1355686_44	eggNOG-mapper	663952.SDD27957_07450	BRO family, N-terminal domain	NA
UHGV-1355686_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1355686_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1355686_44	COG	COG3617	Prophage antirepressor	NA
UHGV-1355686_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1355686_45	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1355686_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1355686_45	UniRef90	UniRef90_E6KJ76	DNA-binding helix-turn-helix protein	NA
UHGV-1355686_45	eggNOG-mapper	1403946.Q615_SPAC00127G0164	Helix-turn-helix XRE-family like proteins	NA
UHGV-1355686_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1355686_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1355686_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1355686_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1355686_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1355686_46	UniRef90	UniRef90_A0A3R9M079	LexA repressor	NA
UHGV-1355686_46	eggNOG-mapper	1035189.HMPREF9954_0283	Peptidase S24-like	NA
UHGV-1355686_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1355686_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1355686_46	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1355686_46	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1355686_47	PHROG	phrog_19811	NA	unknown function
UHGV-1355686_47	eggNOG-mapper	469609.HMPREF0847_01328	NA	NA
UHGV-1355686_47	Structural annotation	PF14947	NA	NA
UHGV-1355686_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1355686_48	PHROG	phrog_95	integrase	integration and excision
UHGV-1355686_48	UniRef90	UniRef90_UPI00094E315D	recombinase family protein	NA
UHGV-1355686_48	eggNOG-mapper	1035189.HMPREF9954_0280	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1355686_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1355686_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-1355686_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1355686_48	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA