UHGV-1355813

Genome information

vOTU vOTU-020793

Genome length 31,096 bps

CDS count 52

Completeness 89.44% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-1355813
vOTU ID	vOTU-020793
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2018_SRR6128067_NODE_96_length_31096_cov_62.179182
BioSample	SAMN07646507
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.15
Jumbo phage	No

Genome content
Genome length	31,096 bps
GC content	35.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.12%
Average CDS length	555.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1355813_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1355813_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1355813_1	UniRef90	UniRef90_A0A168E195	HNHc domain-containing protein	NA
UHGV-1355813_1	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-1355813_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1355813_4	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1355813_4	eggNOG-mapper	679192.HMPREF9013_1311	NA	NA
UHGV-1355813_4	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1355813_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1355813_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1355813_8	UniRef90	UniRef90_A0A3A6DAS1	Single-stranded DNA-binding protein	NA
UHGV-1355813_8	eggNOG-mapper	428127.EUBDOL_01239	Single-stranded DNA-binding protein	NA
UHGV-1355813_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1355813_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1355813_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1355813_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1355813_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1355813_11	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1355813_11	UniRef90	UniRef90_R6FH66	Putative phage replication initiation protein	NA
UHGV-1355813_11	eggNOG-mapper	931626.Awo_c31180	DnaD domain protein	NA
UHGV-1355813_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1355813_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1355813_13	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1355813_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1355813_13	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-1355813_13	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1355813_13	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1355813_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1355813_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1355813_13	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1355813_14	PHROG	phrog_4601	NA	unknown function
UHGV-1355813_15	PHROG	phrog_6631	NA	unknown function
UHGV-1355813_15	UniRef90	UniRef90_A8RC30	3D domain protein	NA
UHGV-1355813_15	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-1355813_15	Pfam	PF06725	3D domain	3D
UHGV-1355813_15	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1355813_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1355813_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1355813_18	UniRef90	UniRef90_A0A6B3ZYL6	Phage antirepressor Ant	NA
UHGV-1355813_18	eggNOG-mapper	1499683.CCFF01000017_gene2614	Phage antirepressor protein	NA
UHGV-1355813_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1355813_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1355813_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1355813_18	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-1355813_19	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-1355813_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1355813_22	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1355813_22	UniRef90	UniRef90_UPI001EE0730D	helix-turn-helix domain-containing protein	NA
UHGV-1355813_22	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-1355813_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1355813_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1355813_22	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1355813_23	PHROG	phrog_17982	NA	unknown function
UHGV-1355813_23	UniRef90	UniRef90_UPI001D029452	NA	NA
UHGV-1355813_23	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-1355813_23	Pfam	PF14020	NA	DUF4236
UHGV-1355813_23	Structural annotation	PF14020, PF21602	NA	NA
UHGV-1355813_25	PHROG	phrog_31229	NA	unknown function
UHGV-1355813_25	UniRef90	UniRef90_A0A6G7WWS9	Glycerol-3-phosphate acyltransferase	NA
UHGV-1355813_25	eggNOG-mapper	562981.HMPREF0428_01861	NA	NA
UHGV-1355813_26	KOfam	K07487	K07487; transposase	NA
UHGV-1355813_26	PHROG	phrog_8928	NA	unknown function
UHGV-1355813_26	UniRef90	UniRef90_A0A374RDP8	IS1182 family transposase	NA
UHGV-1355813_26	eggNOG-mapper	469596.HMPREF9488_02778	Transposase DDE domain	NA
UHGV-1355813_26	Pfam	PF05598	NA	DUF772
UHGV-1355813_26	Pfam	PF13751	Transposase DDE domain	DDE_Tnp_1_6
UHGV-1355813_26	NCBIFam	NF033551.1	IS1182 family transposase	NA
UHGV-1355813_26	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-1355813_26	Structural annotation	PF01609, PF05598, NF033551, COG5421	NA	NA
UHGV-1355813_27	KOfam	K14059	int; integrase	NA
UHGV-1355813_27	PHROG	phrog_1	integrase	integration and excision
UHGV-1355813_27	UniRef90	UniRef90_UPI00096A5EC5	tyrosine-type recombinase/integrase	NA
UHGV-1355813_27	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-1355813_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1355813_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1355813_27	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1355813_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1355813_30	KOfam	K07273	acm; lysozyme	NA
UHGV-1355813_30	PHROG	phrog_291	endolysin	lysis
UHGV-1355813_30	UniRef90	UniRef90_A0A3E2W230	Endolysin	NA
UHGV-1355813_30	eggNOG-mapper	908340.HMPREF9406_3784	Glycosyl hydrolases family 25	NA
UHGV-1355813_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1355813_30	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1355813_30	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-1355813_31	PHROG	phrog_4105	NA	unknown function
UHGV-1355813_31	eggNOG-mapper	1423816.BACQ01000026_gene929	NA	NA
UHGV-1355813_32	PHROG	phrog_27545	NA	unknown function
UHGV-1355813_34	PHROG	phrog_13256	NA	unknown function
UHGV-1355813_35	PHROG	phrog_5717	tail protein	tail
UHGV-1355813_35	UniRef90	UniRef90_A0A099I3H7	Pilus assembly protein (Fragment)	NA
UHGV-1355813_35	eggNOG-mapper	411490.ANACAC_00723	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1355813_35	COG	COG4675	Phage tail collar domain	NA
UHGV-1355813_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1355813_36	UniRef90	UniRef90_UPI001D01FD0A	phage tail protein	NA
UHGV-1355813_36	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1355813_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1355813_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1355813_36	COG	COG4926	Phage-related protein	NA
UHGV-1355813_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1355813_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1355813_37	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-1355813_37	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-1355813_37	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1355813_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-1355813_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1355813_38	PHROG	phrog_23464	NA	unknown function
UHGV-1355813_38	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-1355813_38	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-1355813_38	COG	COG5283	Phage-related tail protein	NA
UHGV-1355813_38	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1355813_39	PHROG	phrog_3033	NA	unknown function
UHGV-1355813_40	PHROG	phrog_709	NA	unknown function
UHGV-1355813_40	UniRef90	UniRef90_Q928G5	Lin2570 protein	NA
UHGV-1355813_40	eggNOG-mapper	202752.JL53_03785	NA	NA
UHGV-1355813_40	Structural annotation	PF11836	NA	NA
UHGV-1355813_41	PHROG	phrog_88	major tail protein	tail
UHGV-1355813_41	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-1355813_41	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-1355813_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1355813_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1355813_42	UniRef90	UniRef90_A0A8F1SG06	HK97 gp10 family phage protein	NA
UHGV-1355813_42	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1355813_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1355813_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1355813_43	PHROG	phrog_78	tail terminator	connector
UHGV-1355813_43	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-1355813_43	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-1355813_43	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1355813_44	PHROG	phrog_25	head closure Hc1	connector
UHGV-1355813_44	UniRef90	UniRef90_UPI0019162AAF	phage head closure protein	NA
UHGV-1355813_44	eggNOG-mapper	742740.HMPREF9474_01210	Phage head-tail joining protein	NA
UHGV-1355813_44	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1355813_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1355813_44	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1355813_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1355813_45	UniRef90	UniRef90_A0A8E3SI43	Phage gp6-like head-tail connector protein	NA
UHGV-1355813_45	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-1355813_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1355813_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1355813_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-1355813_46	UniRef90	UniRef90_A0A8E3SKR7	Phage major capsid protein	NA
UHGV-1355813_46	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-1355813_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1355813_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1355813_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1355813_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1355813_47	KOfam	K06904	NA	NA
UHGV-1355813_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1355813_47	UniRef90	UniRef90_UPI0009F962E8	HK97 family phage prohead protease	NA
UHGV-1355813_47	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-1355813_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1355813_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1355813_47	COG	COG3740	Phage head maturation protease	NA
UHGV-1355813_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1355813_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-1355813_48	UniRef90	UniRef90_A0A8E3N3P1	Phage portal protein	NA
UHGV-1355813_48	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-1355813_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1355813_48	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1355813_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1355813_48	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1355813_49	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1355813_49	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-1355813_49	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-1355813_49	Pfam	PF14359	NA	DUF4406
UHGV-1355813_49	Structural annotation	PF14359	NA	NA
UHGV-1355813_50	PHROG	phrog_918	NA	unknown function
UHGV-1355813_50	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-1355813_50	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1355813_50	Pfam	PF19791	NA	DUF6275
UHGV-1355813_50	Structural annotation	PF19791	NA	NA
UHGV-1355813_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1355813_51	UniRef90	UniRef90_UPI0019155BDB	terminase large subunit	NA
UHGV-1355813_51	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-1355813_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1355813_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1355813_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1355813_51	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1355813_52	UniRef90	UniRef90_UPI00191641C6	P27 family phage terminase small subunit	NA
UHGV-1355813_52	eggNOG-mapper	1304866.K413DRAFT_1221	phage terminase small subunit	NA
UHGV-1355813_52	COG	COG3747	Phage terminase, small subunit	NA