UHGV-1356016

Genome information

vOTU vOTU-020825

Genome length 20,016 bps

CDS count 24

Completeness 59.08% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1356016
vOTU ID	vOTU-020825
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Zuo_2017_SRR5677837_NODE_203_length_20016_cov_38.249887
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.46
Jumbo phage	No

Genome content
Genome length	20,016 bps
GC content	52.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	92.38%
Average CDS length	774.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1356016_1	eggNOG-mapper	1280664.AUIX01000005_gene2823	NA	NA
UHGV-1356016_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1356016_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1356016_2	UniRef90	UniRef90_A0A329TU28	HicB family protein	NA
UHGV-1356016_2	eggNOG-mapper	657322.FPR_23750	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1356016_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1356016_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1356016_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1356016_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1356016_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1356016_3	UniRef90	UniRef90_A0A1Q6T334	Toxin HicA	NA
UHGV-1356016_3	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1356016_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1356016_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1356016_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1356016_4	KOfam	K14059	int; integrase	NA
UHGV-1356016_4	PHROG	phrog_1	integrase	integration and excision
UHGV-1356016_4	UniRef90	UniRef90_UPI0011C8F252	site-specific integrase	NA
UHGV-1356016_4	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-1356016_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1356016_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1356016_4	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1356016_5	UniRef90	UniRef90_UPI0006C78861	helix-turn-helix domain-containing protein	NA
UHGV-1356016_5	eggNOG-mapper	1235797.C816_01775	Helix-turn-helix XRE-family like proteins	NA
UHGV-1356016_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1356016_6	Structural annotation	PF20124	NA	NA
UHGV-1356016_7	PHROG	phrog_1129	holin	lysis
UHGV-1356016_7	UniRef90	UniRef90_UPI00164CD48B	phage holin family protein	NA
UHGV-1356016_7	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1356016_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1356016_7	Structural annotation	PF06946	NA	NA
UHGV-1356016_9	KOfam	K07273	acm; lysozyme	NA
UHGV-1356016_9	PHROG	phrog_291	endolysin	lysis
UHGV-1356016_9	UniRef90	UniRef90_UPI00164A97A0	glycoside hydrolase family 25 protein	NA
UHGV-1356016_9	eggNOG-mapper	1410616.JHXE01000012_gene160	Glycosyl hydrolases family 25	NA
UHGV-1356016_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1356016_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1356016_9	Structural annotation	PF01183, PF05194, COG3757	NA	NA
UHGV-1356016_10	PHROG	phrog_19280	NA	unknown function
UHGV-1356016_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1356016_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1356016_10	Structural annotation	PF10651, PF03426, NF033675, COG3470	NA	NA
UHGV-1356016_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1356016_11	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-1356016_11	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1356016_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1356016_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1356016_11	COG	COG4926	Phage-related protein	NA
UHGV-1356016_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1356016_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1356016_12	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1356016_12	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1356016_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1356016_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1356016_13	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-1356016_13	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1356016_13	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-1356016_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1356016_13	Structural annotation	COG5280	NA	NA
UHGV-1356016_15	PHROG	phrog_88	major tail protein	tail
UHGV-1356016_15	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-1356016_15	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1356016_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1356016_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1356016_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1356016_16	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1356016_16	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1356016_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1356016_16	Structural annotation	TIGR01725	NA	NA
UHGV-1356016_17	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-1356016_17	Structural annotation	PF05657	NA	NA
UHGV-1356016_18	PHROG	phrog_19734	NA	unknown function
UHGV-1356016_18	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-1356016_18	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-1356016_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1356016_19	PHROG	phrog_2550	NA	unknown function
UHGV-1356016_19	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-1356016_19	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1356016_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1356016_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1356016_20	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-1356016_20	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1356016_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1356016_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1356016_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1356016_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1356016_21	KOfam	K06904	NA	NA
UHGV-1356016_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1356016_21	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-1356016_21	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-1356016_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1356016_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1356016_21	COG	COG3740	Phage head maturation protease	NA
UHGV-1356016_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1356016_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1356016_22	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-1356016_22	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1356016_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1356016_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1356016_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1356016_22	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1356016_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1356016_23	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-1356016_23	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1356016_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1356016_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1356016_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1356016_23	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA