UHGV-1357809

Genome information

Genome length 41,007 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9617

Prediction confidence Confident

Genome information
Genome ID	UHGV-1357809
vOTU ID	vOTU-012528
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2019_SRR9161587_NODE_29_length_41007_cov_54.867772
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9617
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.43
Jumbo phage	No

Genome content
Genome length	41,007 bps
GC content	58.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.06%
Average CDS length	660.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1357809_1	eggNOG-mapper	1122983.BAJY01000001_gene186	NA	NA
UHGV-1357809_2	PHROG	phrog_26822	NA	unknown function
UHGV-1357809_2	eggNOG-mapper	742727.HMPREF9447_04846	Phage minor structural protein	NA
UHGV-1357809_2	COG	COG4926	Phage-related protein	NA
UHGV-1357809_2	Structural annotation	PF03921	NA	NA
UHGV-1357809_5	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1357809_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1357809_5	Structural annotation	PF20010	NA	NA
UHGV-1357809_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1357809_6	PHROG	phrog_822	amidase	lysis
UHGV-1357809_6	UniRef90	UniRef90_A0A3C1E3T6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1357809_6	eggNOG-mapper	1121286.AUMT01000009_gene1180	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1357809_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1357809_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1357809_6	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1357809_8	PHROG	phrog_24676	tail length tape measure protein	tail
UHGV-1357809_8	UniRef90	UniRef90_A0A2N6Q6V0	Phage tail tape measure protein	NA
UHGV-1357809_8	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-1357809_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1357809_10	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-1357809_11	PHROG	phrog_16333	NA	unknown function
UHGV-1357809_11	eggNOG-mapper	1236497.BAJQ01000020_gene1852	NA	NA
UHGV-1357809_11	Structural annotation	PF09550	NA	NA
UHGV-1357809_12	eggNOG-mapper	1122991.BAIZ01000014_gene1247	NA	NA
UHGV-1357809_13	eggNOG-mapper	1296416.JACB01000010_gene1582	Purple acid Phosphatase, N-terminal domain	NA
UHGV-1357809_13	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-1357809_13	COG	COG1208	NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis protein s	NA
UHGV-1357809_13	Structural annotation	PF12691, PF18998	NA	NA
UHGV-1357809_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1357809_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1357809_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1357809_16	PHROG	phrog_1407	major tail protein	tail
UHGV-1357809_16	UniRef90	UniRef90_J9DC54	Phage major tail protein	NA
UHGV-1357809_16	eggNOG-mapper	742727.HMPREF9447_01700	Phage tail tube protein	NA
UHGV-1357809_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1357809_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1357809_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1357809_17	UniRef90	UniRef90_UPI000EF03BFB	phage major capsid protein	NA
UHGV-1357809_17	eggNOG-mapper	292414.TM1040_1299	Phage capsid family	NA
UHGV-1357809_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1357809_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1357809_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1357809_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1357809_18	KOfam	K06904	NA	NA
UHGV-1357809_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1357809_18	UniRef90	UniRef90_D3I9W0	HK97 family phage prohead protease	NA
UHGV-1357809_18	eggNOG-mapper	1236514.BAKL01000051_gene3697	Caudovirus prohead serine protease	NA
UHGV-1357809_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1357809_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1357809_18	COG	COG3740	Phage head maturation protease	NA
UHGV-1357809_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1357809_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1357809_19	UniRef90	UniRef90_UPI000ED02F94	phage portal protein	NA
UHGV-1357809_19	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-1357809_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1357809_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1357809_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1357809_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1357809_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1357809_20	UniRef90	UniRef90_UPI000D0F097C	terminase large subunit	NA
UHGV-1357809_20	eggNOG-mapper	266762.HQ36_02085	Phage Terminase	NA
UHGV-1357809_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1357809_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1357809_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1357809_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1357809_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1357809_22	UniRef90	UniRef90_UPI001F200179	HNH endonuclease	NA
UHGV-1357809_22	eggNOG-mapper	266762.HQ36_02070	HNH endonuclease	NA
UHGV-1357809_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1357809_26	KOfam	K14059	int; integrase	NA
UHGV-1357809_26	PHROG	phrog_1	integrase	integration and excision
UHGV-1357809_26	UniRef90	UniRef90_UPI001EDA9EB9	site-specific integrase	NA
UHGV-1357809_26	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1357809_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1357809_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1357809_26	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1357809_27	UniRef90	UniRef90_UPI001CC38B67	type II toxin-antitoxin system VapC family toxin	NA
UHGV-1357809_27	eggNOG-mapper	762982.HMPREF9442_02512	PIN domain	NA
UHGV-1357809_27	Pfam	PF01850	PIN domain	PIN
UHGV-1357809_27	COG	COG3744	PIN domain nuclease, a component of toxin-antitoxin system (PIN domain)	NA
UHGV-1357809_27	Structural annotation	PF01850, MF_00265, NF010285, COG3744	NA	NA
UHGV-1357809_34	KOfam	K18828	mvpA, vapC; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]	NA
UHGV-1357809_34	UniRef90	UniRef90_UPI000468D54A	type II toxin-antitoxin system VapC family toxin	NA
UHGV-1357809_34	eggNOG-mapper	1235815.BAIX01000004_gene521	PIN domain	NA
UHGV-1357809_34	Pfam	PF01850	PIN domain	PIN
UHGV-1357809_34	COG	COG3744	PIN domain nuclease, a component of toxin-antitoxin system (PIN domain)	NA
UHGV-1357809_34	Structural annotation	PF01850, MF_00265, NF010285, COG3744	NA	NA
UHGV-1357809_36	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-1357809_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1357809_42	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1357809_42	eggNOG-mapper	1121441.AUCX01000014_gene525	NA	NA
UHGV-1357809_42	Structural annotation	PF20024, MF_01819, NF041413, COG5529	NA	NA
UHGV-1357809_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1357809_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1357809_45	UniRef90	UniRef90_UPI001D14CE70	AAA family ATPase	NA
UHGV-1357809_45	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1357809_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-1357809_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1357809_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1357809_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1357809_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1357809_48	UniRef90	UniRef90_UPI00068D7064	recombinase RecT	NA
UHGV-1357809_48	eggNOG-mapper	1392486.JIAF01000004_gene2637	RecT family	NA
UHGV-1357809_48	Pfam	PF03837	RecT family	RecT
UHGV-1357809_48	NCBIFam	TIGR01965.1	VCBS domain-containing protein	NA
UHGV-1357809_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1357809_48	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1357809_49	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1357809_49	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1357809_49	UniRef90	UniRef90_A0A2N6Q706	MBL fold hydrolase	NA
UHGV-1357809_49	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-1357809_49	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1357809_49	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1357809_49	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1357809_53	PHROG	phrog_21498	NA	unknown function
UHGV-1357809_53	UniRef90	UniRef90_J9FHV4	ParB-like nuclease	NA
UHGV-1357809_53	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-1357809_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1357809_54	PHROG	phrog_8278	NA	unknown function
UHGV-1357809_54	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-1357809_54	eggNOG-mapper	411901.BACCAC_01121	NA	NA
UHGV-1357809_55	eggNOG-mapper	1122983.BAJY01000001_gene187	NA	NA