UHGV-1357871

Genome information

vOTU vOTU-020796

Genome length 38,049 bps

CDS count 53

Completeness 76.62% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-1357871
vOTU ID	vOTU-020796
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Shkoporov_2018_SRR6128039_NODE_20_length_38049_cov_80.828789
BioSample	SAMN07646541
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.38
Jumbo phage	No

Genome content
Genome length	38,049 bps
GC content	33.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.82%
Average CDS length	634.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1357871_2	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-1357871_3	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1357871_3	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1357871_5	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1357871_5	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1357871_6	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-1357871_6	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-1357871_6	UniRef90	UniRef90_UPI001373859D	AAA family ATPase	NA
UHGV-1357871_6	eggNOG-mapper	278957.ABEA03000120_gene1205	Associated with various cellular activities	NA
UHGV-1357871_6	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-1357871_6	Pfam	PF08406	CbbQ/NirQ/NorQ C-terminal	CbbQ_C
UHGV-1357871_6	COG	COG0714	MoxR-like ATPase	NA
UHGV-1357871_6	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-1357871_7	PHROG	phrog_1909	NA	unknown function
UHGV-1357871_7	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-1357871_9	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1357871_11	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-1357871_11	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-1357871_11	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-1357871_11	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-1357871_14	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1357871_16	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-1357871_16	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-1357871_16	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-1357871_16	eggNOG-mapper	1121267.JHZL01000006_gene901	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-1357871_16	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-1357871_16	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1357871_16	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-1357871_17	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1357871_17	UniRef90	UniRef90_UPI00164E7D72	sugar-phospahte nucleotidyltransferase	NA
UHGV-1357871_17	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-1357871_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1357871_17	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-1357871_18	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1357871_18	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1357871_18	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-1357871_18	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1357871_18	Pfam	PF02811	PHP domain	PHP
UHGV-1357871_18	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1357871_18	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1357871_18	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1357871_18	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1357871_18	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1357871_18	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-1357871_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-1357871_19	UniRef90	UniRef90_D7GXC8	NA	NA
UHGV-1357871_19	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-1357871_19	Pfam	PF11753	NA	DUF3310
UHGV-1357871_20	UniRef90	UniRef90_A0A7X8WD06	NA	NA
UHGV-1357871_23	Structural annotation	PF08804	NA	NA
UHGV-1357871_24	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1357871_24	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1357871_24	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-1357871_24	eggNOG-mapper	573061.Clocel_1457	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1357871_24	PADLOC	drt-UG29	DRT	DRT
UHGV-1357871_24	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1357871_24	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1357871_24	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1357871_24	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1357871_28	PHROG	phrog_937	hemolysin	other
UHGV-1357871_28	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-1357871_29	PHROG	phrog_1220	head protein	head and packaging
UHGV-1357871_29	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-1357871_29	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-1357871_29	Structural annotation	PF08931, PF20747	NA	NA
UHGV-1357871_30	PHROG	phrog_538	minor tail protein	tail
UHGV-1357871_30	UniRef90	UniRef90_A0A1M6L0E8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1357871_30	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1357871_30	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1357871_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1357871_31	PHROG	phrog_36410	NA	unknown function
UHGV-1357871_31	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-1357871_31	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-1357871_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1357871_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-1357871_31	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1357871_32	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1357871_32	UniRef90	UniRef90_A0A351TJS6	Phage tail tape measure protein	NA
UHGV-1357871_32	eggNOG-mapper	411473.RUMCAL_03183	Phage tail tape measure protein, TP901 family	NA
UHGV-1357871_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1357871_32	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1357871_32	COG	COG5283	Phage-related tail protein	NA
UHGV-1357871_32	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1357871_33	PHROG	phrog_6280	NA	unknown function
UHGV-1357871_33	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-1357871_33	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-1357871_34	PHROG	phrog_6686	tail tube protein	tail
UHGV-1357871_34	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1357871_34	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-1357871_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1357871_35	PHROG	phrog_7585	NA	unknown function
UHGV-1357871_35	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-1357871_36	eggNOG-mapper	632292.Calhy_0769	Phage virion morphogenesis	NA
UHGV-1357871_36	COG	COG5005	NA	NA
UHGV-1357871_36	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1357871_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1357871_38	PHROG	phrog_4020	NA	unknown function
UHGV-1357871_38	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-1357871_39	Structural annotation	PF08593	NA	NA
UHGV-1357871_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-1357871_40	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1357871_40	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1357871_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1357871_40	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1357871_41	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-1357871_41	Structural annotation	PF02924	NA	NA
UHGV-1357871_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1357871_42	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-1357871_42	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1357871_43	PHROG	phrog_1315	NA	unknown function
UHGV-1357871_44	Structural annotation	PF06133	NA	NA
UHGV-1357871_47	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1357871_47	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-1357871_47	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-1357871_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-1357871_48	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-1357871_48	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1357871_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1357871_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1357871_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1357871_49	PHROG	phrog_435	endolysin	lysis
UHGV-1357871_49	UniRef90	UniRef90_B0G4K0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1357871_49	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1357871_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1357871_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1357871_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1357871_49	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-1357871_50	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1357871_50	UniRef90	UniRef90_A0A385Q0Q2	NA	NA
UHGV-1357871_50	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-1357871_50	Pfam	PF14359	NA	DUF4406
UHGV-1357871_50	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1357871_51	PHROG	phrog_443	holin	lysis
UHGV-1357871_51	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-1357871_51	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-1357871_51	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1357871_51	Structural annotation	PF16945	NA	NA
UHGV-1357871_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1357871_52	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1357871_52	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-1357871_52	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-1357871_52	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1357871_52	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1357871_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1357871_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-1357871_52	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1357871_53	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1357871_53	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-1357871_53	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-1357871_53	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1357871_53	COG	COG2963	Transposase InsE and inactivated derivatives	NA