UHGV-1358356

Genome information

Genome length 37,014 bps

CDS count 62

Completeness 93.35% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1358356
vOTU ID	vOTU-061444
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Zuo_2017_SRR5677794_NODE_30_length_37014_cov_10.183663
BioSample	SAMN06019317
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.57
Jumbo phage	No

Genome content
Genome length	37,014 bps
GC content	48.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.97%
Average CDS length	553.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1358356_1	PHROG	phrog_888	NA	unknown function
UHGV-1358356_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1358356_2	KOfam	K14059	int; integrase	NA
UHGV-1358356_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1358356_2	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-1358356_2	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-1358356_2	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1358356_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1358356_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1358356_2	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-1358356_3	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1358356_4	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1358356_4	Structural annotation	PF12510	NA	NA
UHGV-1358356_5	PHROG	phrog_20016	NA	unknown function
UHGV-1358356_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1358356_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1358356_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1358356_6	PHROG	phrog_16490	NA	unknown function
UHGV-1358356_6	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1358356_7	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1358356_7	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-1358356_7	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-1358356_8	PHROG	phrog_22984	NA	unknown function
UHGV-1358356_9	PHROG	phrog_22984	NA	unknown function
UHGV-1358356_10	PHROG	phrog_21718	NA	unknown function
UHGV-1358356_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1358356_11	PHROG	phrog_3754	NA	unknown function
UHGV-1358356_11	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1358356_12	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-1358356_12	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1358356_13	PHROG	phrog_937	hemolysin	other
UHGV-1358356_13	eggNOG-mapper	1226322.HMPREF1545_00067	NA	NA
UHGV-1358356_14	PHROG	phrog_1129	holin	lysis
UHGV-1358356_14	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-1358356_14	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-1358356_14	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1358356_14	Structural annotation	PF06946	NA	NA
UHGV-1358356_15	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1358356_15	PHROG	phrog_18955	NA	unknown function
UHGV-1358356_15	UniRef90	UniRef90_A0A1Y3X8T4	MurNAc-LAA domain-containing protein	NA
UHGV-1358356_15	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-1358356_15	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1358356_15	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1358356_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1358356_15	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-1358356_18	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1358356_18	UniRef90	UniRef90_A0A8A6KGY5	Phage tail assembly chaperone	NA
UHGV-1358356_18	eggNOG-mapper	666685.R2APBS1_2865	Phage tail assembly chaperone protein	NA
UHGV-1358356_18	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1358356_19	Structural annotation	PF19789	NA	NA
UHGV-1358356_20	PHROG	phrog_18725	NA	unknown function
UHGV-1358356_20	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1358356_20	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1358356_21	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1358356_21	PHROG	phrog_11157	NA	unknown function
UHGV-1358356_21	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1358356_21	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-1358356_21	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1358356_21	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1358356_21	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1358356_21	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1358356_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1358356_23	PHROG	phrog_13879	NA	unknown function
UHGV-1358356_23	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-1358356_23	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1358356_24	PHROG	phrog_1194	NA	unknown function
UHGV-1358356_24	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1358356_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1358356_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1358356_25	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1358356_25	COG	COG1511	NA	NA
UHGV-1358356_25	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1358356_26	PHROG	phrog_706	NA	unknown function
UHGV-1358356_26	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1358356_26	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1358356_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1358356_26	Structural annotation	PF06854	NA	NA
UHGV-1358356_27	PHROG	phrog_11299	NA	unknown function
UHGV-1358356_27	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1358356_27	Structural annotation	PF10666	NA	NA
UHGV-1358356_28	PHROG	phrog_3099	NA	unknown function
UHGV-1358356_28	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-1358356_28	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1358356_29	PHROG	phrog_3266	tail completion	connector
UHGV-1358356_29	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1358356_29	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1358356_29	Structural annotation	PF12691	NA	NA
UHGV-1358356_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1358356_30	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1358356_30	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1358356_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1358356_30	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1358356_31	PHROG	phrog_3366	NA	unknown function
UHGV-1358356_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1358356_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1358356_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1358356_32	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1358356_33	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-1358356_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-1358356_34	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-1358356_34	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1358356_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1358356_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1358356_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1358356_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1358356_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1358356_35	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1358356_37	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-1358356_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1358356_38	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-1358356_38	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1358356_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1358356_38	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1358356_38	COG	COG2369	NA	NA
UHGV-1358356_38	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1358356_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-1358356_40	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-1358356_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1358356_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1358356_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1358356_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1358356_41	PHROG	phrog_10250	NA	unknown function
UHGV-1358356_41	UniRef90	UniRef90_A0A1I3QR69	Phage terminase, large subunit, PBSX family	NA
UHGV-1358356_41	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1358356_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1358356_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1358356_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-1358356_41	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1358356_42	PHROG	phrog_930	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1358356_42	UniRef90	UniRef90_A0A2E0SNN0	Chromosome partitioning protein ParB (Fragment)	NA
UHGV-1358356_42	eggNOG-mapper	879305.HMPREF9290_0148	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1358356_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1358356_42	COG	COG0863	DNA modification methylase	NA
UHGV-1358356_43	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-1358356_43	UniRef90	UniRef90_A0A845R9C9	Rha family transcriptional regulator	NA
UHGV-1358356_43	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-1358356_43	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1358356_43	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1358356_43	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1358356_43	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1358356_46	PHROG	phrog_31336	NA	unknown function
UHGV-1358356_46	UniRef90	UniRef90_A0A5C7LKL9	NA	NA
UHGV-1358356_46	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-1358356_46	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1358356_47	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1358356_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1358356_47	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1358356_48	PHROG	phrog_22543	NA	unknown function
UHGV-1358356_51	PHROG	phrog_25732	NA	unknown function
UHGV-1358356_51	UniRef90	UniRef90_A0A7G9WJW0	Lar family restriction alleviation protein	NA
UHGV-1358356_52	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-1358356_52	eggNOG-mapper	1123288.SOV_1c01360	UMP catabolic process	NA
UHGV-1358356_52	Pfam	PF04448	NA	DUF551
UHGV-1358356_52	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-1358356_54	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1358356_54	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-1358356_56	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1358356_56	PHROG	phrog_923	NA	unknown function
UHGV-1358356_56	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-1358356_56	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1358356_56	Pfam	PF19062	NA	DUF5758
UHGV-1358356_56	COG	COG1357	NA	NA
UHGV-1358356_56	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-1358356_57	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1358356_57	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1358356_57	UniRef90	UniRef90_A0A7X2NP80	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1358356_57	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1358356_57	PADLOC	DruM2_00001	DNA cytosine methylase	Druantia
UHGV-1358356_57	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1358356_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1358356_57	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1358356_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1358356_60	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1358356_60	UniRef90	UniRef90_A0A1Q6KZJ4	Endodeoxyribonuclease RusA	NA
UHGV-1358356_60	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1358356_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1358356_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1358356_60	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1358356_62	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-1358356_62	COG	COG0305	Replicative DNA helicase	NA