UHGV-1358715

Genome information

vOTU vOTU-002062

Genome length 42,396 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1358715
vOTU ID	vOTU-002062
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0281309
BioSample	SAMN03418268
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.89
Jumbo phage	No

Genome content
Genome length	42,396 bps
GC content	56.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.60%
Average CDS length	685.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1358715_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1358715_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1358715_3	UniRef90	UniRef90_A0A1C5N467	Helix-turn-helix	NA
UHGV-1358715_3	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-1358715_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1358715_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1358715_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1358715_6	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1358715_7	KOfam	K14059	int; integrase	NA
UHGV-1358715_7	PHROG	phrog_1	integrase	integration and excision
UHGV-1358715_7	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-1358715_7	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-1358715_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1358715_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1358715_7	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1358715_8	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-1358715_8	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1358715_11	PHROG	phrog_36767	NA	unknown function
UHGV-1358715_11	UniRef90	UniRef90_UPI00067E7E25	NA	NA
UHGV-1358715_12	Structural annotation	PF18812, COG2929	NA	NA
UHGV-1358715_14	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-1358715_14	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1358715_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1358715_14	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-1358715_15	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1358715_15	PHROG	phrog_1794	amidase	lysis
UHGV-1358715_15	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1358715_15	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1358715_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1358715_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1358715_15	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1358715_16	PHROG	phrog_13256	NA	unknown function
UHGV-1358715_16	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-1358715_18	PHROG	phrog_937	hemolysin	other
UHGV-1358715_18	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1358715_19	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-1358715_21	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1358715_21	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-1358715_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1358715_21	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1358715_21	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1358715_22	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1358715_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1358715_23	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1358715_23	PHROG	phrog_819	tail protein	tail
UHGV-1358715_23	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1358715_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1358715_24	Structural annotation	PF18962, NF011773	NA	NA
UHGV-1358715_25	PHROG	phrog_22978	NA	unknown function
UHGV-1358715_25	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-1358715_25	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1358715_26	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-1358715_26	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1358715_28	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-1358715_29	PHROG	phrog_12105	NA	unknown function
UHGV-1358715_30	PHROG	phrog_15239	NA	unknown function
UHGV-1358715_31	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1358715_31	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1358715_31	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1358715_31	Pfam	PF13252	NA	DUF4043
UHGV-1358715_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1358715_31	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1358715_32	PHROG	phrog_13908	NA	unknown function
UHGV-1358715_32	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1358715_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-1358715_33	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1358715_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1358715_34	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1358715_34	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1358715_34	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1358715_35	PHROG	phrog_28563	NA	unknown function
UHGV-1358715_35	UniRef90	UniRef90_A0A7G9GB56	INTEIN_C_TER domain-containing protein	NA
UHGV-1358715_35	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1358715_36	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1358715_36	UniRef90	UniRef90_A0A396QEH1	HNH endonuclease	NA
UHGV-1358715_36	eggNOG-mapper	1235800.C819_00490	HNH endonuclease	NA
UHGV-1358715_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1358715_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1358715_37	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1358715_37	UniRef90	UniRef90_A0A396QXH8	Terminase-like family protein	NA
UHGV-1358715_37	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1358715_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1358715_37	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-1358715_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1358715_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1358715_38	Structural annotation	PF16677	NA	NA
UHGV-1358715_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1358715_39	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1358715_39	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1358715_40	PHROG	phrog_21498	NA	unknown function
UHGV-1358715_40	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-1358715_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1358715_40	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1358715_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1358715_45	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1358715_45	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-1358715_45	Pfam	PF06356	NA	DUF1064
UHGV-1358715_45	Structural annotation	PF06356	NA	NA
UHGV-1358715_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1358715_49	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1358715_49	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-1358715_49	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1358715_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1358715_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1358715_49	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1358715_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1358715_49	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1358715_52	Structural annotation	PF05082	NA	NA
UHGV-1358715_54	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA