UHGV-1359480

Genome information

vOTU vOTU-031922

Genome length 35,208 bps

CDS count 47

Completeness 88.63% (medium-quality)

geNomad score 0.9360

Prediction confidence Confident

Genome information
Genome ID	UHGV-1359480
vOTU ID	vOTU-031922
vOTU representative	Yes
Source dataset	GVD
Original genome ID	Zuo_2017_SRR5677765_NODE_34_length_35208_cov_136.160299
BioSample	SAMN06019334
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9360
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.4
Jumbo phage	No

Genome content
Genome length	35,208 bps
GC content	38.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.52%
Average CDS length	687.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1359480_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1359480_1	UniRef90	UniRef90_A0A1Z1SXQ4	Phage terminase small subunit P27 family	NA
UHGV-1359480_1	eggNOG-mapper	1124991.MU9_1867	phage terminase small subunit	NA
UHGV-1359480_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1359480_1	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1359480_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1359480_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1359480_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1359480_2	UniRef90	UniRef90_A0A1Z1SWX6	Terminase	NA
UHGV-1359480_2	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-1359480_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1359480_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1359480_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1359480_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1359480_3	UniRef90	UniRef90_A0A1P8DTI5	Portal protein	NA
UHGV-1359480_3	eggNOG-mapper	911008.GLAD_04128	portal protein	NA
UHGV-1359480_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1359480_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1359480_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1359480_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1359480_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1359480_4	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-1359480_4	UniRef90	UniRef90_A0A0G4QJ76	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1359480_4	eggNOG-mapper	35703.DQ02_24250	Clp protease	NA
UHGV-1359480_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1359480_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1359480_4	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1359480_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1359480_5	UniRef90	UniRef90_A0A1P8DTJ7	Major capsid protein	NA
UHGV-1359480_5	eggNOG-mapper	741091.Rahaq_1809	capsid protein	NA
UHGV-1359480_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1359480_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1359480_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1359480_5	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-1359480_6	KOfam	K14479	EP; procyclin	NA
UHGV-1359480_6	PHROG	phrog_5463	NA	unknown function
UHGV-1359480_6	UniRef90	UniRef90_A0A379FQN9	Procyclic acidic repetitive protein (PARP)	NA
UHGV-1359480_6	eggNOG-mapper	1111728.ATYS01000061_gene462	NA	NA
UHGV-1359480_6	Structural annotation	PF01281	NA	NA
UHGV-1359480_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1359480_7	UniRef90	UniRef90_A0A6G6SIF8	Phage gp6-like head-tail connector protein	NA
UHGV-1359480_7	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-1359480_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1359480_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1359480_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1359480_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-1359480_8	UniRef90	UniRef90_A0A6M8RC74	Head-tail adaptor protein	NA
UHGV-1359480_8	eggNOG-mapper	529507.PMI0929	Phage head-tail joining protein	NA
UHGV-1359480_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1359480_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1359480_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1359480_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1359480_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1359480_9	UniRef90	UniRef90_A0A6G6SGH3	HK97 gp10 family phage protein	NA
UHGV-1359480_9	eggNOG-mapper	529507.PMI0930	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1359480_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1359480_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1359480_9	Structural annotation	TIGR01725	NA	NA
UHGV-1359480_10	PHROG	phrog_78	tail terminator	connector
UHGV-1359480_10	UniRef90	UniRef90_A0A6M8RAA9	NA	NA
UHGV-1359480_10	eggNOG-mapper	585.DR95_1157	NA	NA
UHGV-1359480_10	Pfam	PF11367	NA	DUF3168
UHGV-1359480_10	Structural annotation	PF11367	NA	NA
UHGV-1359480_11	PHROG	phrog_584	major tail protein	tail
UHGV-1359480_11	UniRef90	UniRef90_B4ETF4	NA	NA
UHGV-1359480_11	eggNOG-mapper	471881.PROPEN_00047	NA	NA
UHGV-1359480_11	Structural annotation	PF16461, PF12195, TIGR02126, COG5437	NA	NA
UHGV-1359480_12	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-1359480_12	eggNOG-mapper	529507.PMI0933	NA	NA
UHGV-1359480_12	Structural annotation	PF16462	NA	NA
UHGV-1359480_13	PHROG	phrog_337	tail protein	tail
UHGV-1359480_13	UniRef90	UniRef90_A0A379FGE1	NA	NA
UHGV-1359480_13	eggNOG-mapper	529507.PMI0934	NA	NA
UHGV-1359480_13	Pfam	PF13227	NA	DUF4035
UHGV-1359480_14	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1359480_14	UniRef90	UniRef90_A0A1D3DH35	Phage tail tape measure protein	NA
UHGV-1359480_14	eggNOG-mapper	529507.PMI0936	Phage-related minor tail protein	NA
UHGV-1359480_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1359480_14	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-1359480_14	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1359480_14	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1359480_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1359480_14	Structural annotation	PF20155, PF06120, MF_04138, TIGR01541, TIGR01760, COG5281	NA	NA
UHGV-1359480_15	PHROG	phrog_1302	distal tail protein	tail
UHGV-1359480_15	UniRef90	UniRef90_B4ETF9	NA	NA
UHGV-1359480_15	eggNOG-mapper	585.DR95_1152	NA	NA
UHGV-1359480_15	Structural annotation	PF09343, TIGR02217, COG4718	NA	NA
UHGV-1359480_16	PHROG	phrog_2048	tail protein	tail
UHGV-1359480_16	UniRef90	UniRef90_A0A140NI21	NA	NA
UHGV-1359480_16	eggNOG-mapper	529507.PMI0938	NA	NA
UHGV-1359480_16	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-1359480_17	PHROG	phrog_5031	NA	unknown function
UHGV-1359480_17	UniRef90	UniRef90_UPI001F4D99D5	YebO family protein	NA
UHGV-1359480_17	eggNOG-mapper	640513.Entas_2534	YebO-like protein	NA
UHGV-1359480_17	Pfam	PF13974	YebO-like protein	YebO
UHGV-1359480_18	PHROG	phrog_2134	NA	unknown function
UHGV-1359480_18	UniRef90	UniRef90_B4ETG1	NA	NA
UHGV-1359480_18	eggNOG-mapper	585.DR95_1150	NA	NA
UHGV-1359480_18	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-1359480_19	PHROG	phrog_10903	NA	unknown function
UHGV-1359480_19	UniRef90	UniRef90_A0A7D6A640	NA	NA
UHGV-1359480_19	eggNOG-mapper	471881.PROPEN_02376	Fibronectin type 3 domain	NA
UHGV-1359480_19	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1359480_19	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1359480_19	Pfam	PF09327	NA	DUF1983
UHGV-1359480_19	Pfam	PF12421	Fibronectin type III protein	DUF3672
UHGV-1359480_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1359480_19	Structural annotation	PF13550, PF09327, PF16323, PF21605, MF_04116, NF040662, NF010681, COG4733	NA	NA
UHGV-1359480_20	PHROG	phrog_1591	tail fiber protein	tail
UHGV-1359480_20	eggNOG-mapper	585.DR95_413	NA	NA
UHGV-1359480_20	Structural annotation	PF12195	NA	NA
UHGV-1359480_22	KOfam	K05877	tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor	NA
UHGV-1359480_22	PHROG	phrog_8572	NA	unknown function
UHGV-1359480_22	UniRef90	UniRef90_A0A6G6SMS5	HAMP domain-containing protein	NA
UHGV-1359480_22	eggNOG-mapper	640513.Entas_1879	Homologues of the ligand binding domain of Tar	NA
UHGV-1359480_22	Pfam	PF02203	Tar ligand binding domain homologue	TarH
UHGV-1359480_22	Pfam	PF00672	HAMP domain	HAMP
UHGV-1359480_22	Pfam	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain	MCPsignal
UHGV-1359480_22	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1359480_23	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-1359480_23	PHROG	phrog_1	integrase	integration and excision
UHGV-1359480_23	UniRef90	UniRef90_A0A140NJD3	Tyr recombinase domain-containing protein	NA
UHGV-1359480_23	eggNOG-mapper	585.DR95_2803	Arm DNA-binding domain	NA
UHGV-1359480_23	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1359480_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1359480_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1359480_23	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-1359480_24	UniRef90	UniRef90_A0A6G6SK87	AlpA family phage regulatory protein	NA
UHGV-1359480_24	eggNOG-mapper	585.DR95_3476	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-1359480_24	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1359480_25	PHROG	phrog_36275	NA	unknown function
UHGV-1359480_25	eggNOG-mapper	585.DR95_3477	NA	NA
UHGV-1359480_26	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1359480_26	UniRef90	UniRef90_M7D5B5	Putative bacteriophage protein	NA
UHGV-1359480_26	eggNOG-mapper	585.DR95_3478	NA	NA
UHGV-1359480_26	Structural annotation	MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1359480_27	PHROG	phrog_1515	NA	unknown function
UHGV-1359480_27	eggNOG-mapper	585.DR95_3479	NA	NA
UHGV-1359480_27	Structural annotation	PF17345	NA	NA
UHGV-1359480_28	PHROG	phrog_6610	NA	unknown function
UHGV-1359480_28	UniRef90	UniRef90_A0A6G6TFH4	DNA-binding protein	NA
UHGV-1359480_28	eggNOG-mapper	585.DR95_3480	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1359480_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1359480_28	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1359480_29	PHROG	phrog_37204	NA	unknown function
UHGV-1359480_29	eggNOG-mapper	585.DR95_3481	NA	NA
UHGV-1359480_32	PHROG	phrog_1886	NA	unknown function
UHGV-1359480_32	UniRef90	UniRef90_UPI001376F590	V-type ATPase 116kDa subunit family protein	NA
UHGV-1359480_32	eggNOG-mapper	471874.PROSTU_01875	NA	NA
UHGV-1359480_37	eggNOG-mapper	585.DR95_3488	NA	NA
UHGV-1359480_40	PHROG	phrog_5783	NA	unknown function
UHGV-1359480_40	UniRef90	UniRef90_UPI001A3224A3	NYN domain-containing protein	NA
UHGV-1359480_40	eggNOG-mapper	1005995.GTPT_1603	NYN domain	NA
UHGV-1359480_40	Pfam	PF01936	NYN domain	NYN
UHGV-1359480_40	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1359480_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1359480_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1359480_41	UniRef90	UniRef90_A0A198GDA6	Repressor protein CI	NA
UHGV-1359480_41	eggNOG-mapper	520999.PROVALCAL_00636	Peptidase S24-like	NA
UHGV-1359480_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1359480_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1359480_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1359480_41	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-1359480_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1359480_42	UniRef90	UniRef90_UPI000B40AF95	helix-turn-helix domain-containing protein	NA
UHGV-1359480_42	eggNOG-mapper	520999.PROVALCAL_00635	Helix-turn-helix XRE-family like proteins	NA
UHGV-1359480_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1359480_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1359480_43	PHROG	phrog_852	NA	unknown function
UHGV-1359480_43	eggNOG-mapper	585.DR95_3495	NA	NA
UHGV-1359480_44	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1359480_44	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1359480_44	UniRef90	UniRef90_A0A6G6SMV5	DEAD/DEAH box helicase family protein	NA
UHGV-1359480_44	eggNOG-mapper	585.DR95_3498	helicase	NA
UHGV-1359480_44	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1359480_44	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1359480_44	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1359480_44	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1359480_44	Structural annotation	PF07652, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1359480_45	PHROG	phrog_510	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1359480_45	UniRef90	UniRef90_A0A0G4QGU1	Zinc-binding domain of primase-helicase	NA
UHGV-1359480_45	eggNOG-mapper	585.DR95_3499	Zinc-binding domain of primase-helicase	NA
UHGV-1359480_45	Pfam	PF08273	Zinc-binding domain of primase-helicase	Prim_Zn_Ribbon
UHGV-1359480_45	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-1359480_45	COG	COG4643	NA	NA
UHGV-1359480_45	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-1359480_46	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-1359480_46	UniRef90	UniRef90_A0A2J9LC82	Antitermination protein	NA
UHGV-1359480_46	eggNOG-mapper	585.DR95_3500	Antitermination protein Q	NA
UHGV-1359480_46	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-1359480_46	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-1359480_47	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1359480_47	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1359480_47	UniRef90	UniRef90_T0QLH0	HTH cro/C1-type domain-containing protein	NA
UHGV-1359480_47	eggNOG-mapper	243265.plu3491	Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin	NA
UHGV-1359480_47	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1359480_47	Structural annotation	PF15970, PF13744, TIGR03070, COG1598, COG1396	NA	NA