UHGV-1360432

Genome information

Genome length 42,302 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1360432
vOTU ID	vOTU-045427
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0280601
BioSample	SAMEA3449300
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.15
Jumbo phage	No

Genome content
Genome length	42,302 bps
GC content	42.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.29%
Average CDS length	670.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1360432_1	UniRef90	UniRef90_UPI0009352414	phage holin family protein	NA
UHGV-1360432_1	eggNOG-mapper	484018.BACPLE_02426	Bacteriophage holin family	NA
UHGV-1360432_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1360432_2	PHROG	phrog_894	endolysin	lysis
UHGV-1360432_2	UniRef90	UniRef90_A0A1Y4CAH0	Peptidase_M15_3 domain-containing protein	NA
UHGV-1360432_2	eggNOG-mapper	997884.HMPREF1068_03187	Peptidase M15	NA
UHGV-1360432_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1360432_2	COG	COG3108	NA	NA
UHGV-1360432_2	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1360432_3	eggNOG-mapper	1410625.JHWK01000005_gene1354	NA	NA
UHGV-1360432_5	PHROG	phrog_14010	NA	unknown function
UHGV-1360432_5	UniRef90	UniRef90_A0A7U3RMS0	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-1360432_5	eggNOG-mapper	1347393.HG726026_gene2536	NA	NA
UHGV-1360432_5	Pfam	PF20186	NA	DUF6549
UHGV-1360432_5	Structural annotation	PF20186	NA	NA
UHGV-1360432_7	PHROG	phrog_32997	NA	unknown function
UHGV-1360432_7	UniRef90	UniRef90_A0A4Y9IS11	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-1360432_7	eggNOG-mapper	470145.BACCOP_01142	NA	NA
UHGV-1360432_12	Structural annotation	PF20020	NA	NA
UHGV-1360432_13	UniRef90	UniRef90_A0A7U3RL19	Helix-turn-helix transcriptional regulator	NA
UHGV-1360432_13	eggNOG-mapper	1105171.H2A0B0_9CAUD	NA	NA
UHGV-1360432_13	Structural annotation	PF12844, COG3655	NA	NA
UHGV-1360432_14	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1360432_14	UniRef90	UniRef90_A0A7U3RL83	Exonuclease	NA
UHGV-1360432_14	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1360432_14	Structural annotation	PF06023, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1360432_15	eggNOG-mapper	1089553.Tph_c11910	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1360432_15	Pfam	PF18897	Recombination directionality factor-like	Gp3-like
UHGV-1360432_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1360432_15	Structural annotation	PF18897	NA	NA
UHGV-1360432_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1360432_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1360432_17	UniRef90	UniRef90_A0A3N2KK26	Methyltransferase	NA
UHGV-1360432_17	eggNOG-mapper	1125725.HMPREF1325_1310	N-4 methylation of cytosine	NA
UHGV-1360432_17	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1360432_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1360432_17	COG	COG0863	DNA modification methylase	NA
UHGV-1360432_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1360432_19	PHROG	phrog_34953	NA	unknown function
UHGV-1360432_19	eggNOG-mapper	99179.B5TRA8_9CAUD	NA	NA
UHGV-1360432_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1360432_20	UniRef90	UniRef90_A0A7U3MXY0	Holliday junction resolvase	NA
UHGV-1360432_20	eggNOG-mapper	1176422.I6R9X3_9CAUD	nucleic acid binding	NA
UHGV-1360432_20	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-1360432_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1360432_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1360432_21	UniRef90	UniRef90_R6F250	dUTP diphosphatase	NA
UHGV-1360432_21	eggNOG-mapper	679189.HMPREF9019_0917	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1360432_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-1360432_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1360432_21	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1360432_23	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-1360432_23	Structural annotation	PF18358, NF037951	NA	NA
UHGV-1360432_25	PHROG	phrog_1499	NA	unknown function
UHGV-1360432_25	UniRef90	UniRef90_UPI0018A888BC	AAA family ATPase	NA
UHGV-1360432_25	eggNOG-mapper	926549.KI421517_gene2360	nuclear chromosome segregation	NA
UHGV-1360432_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-1360432_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1360432_25	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1360432_26	PHROG	phrog_23774	NA	unknown function
UHGV-1360432_26	UniRef90	UniRef90_A0A7U3MW72	Protein NinB/nuclease	NA
UHGV-1360432_26	eggNOG-mapper	1105171.H2A0G1_9CAUD	NA	NA
UHGV-1360432_26	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1360432_30	eggNOG-mapper	172045.KS04_18310	NA	NA
UHGV-1360432_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1360432_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1360432_31	UniRef90	UniRef90_UPI0018AAAA5A	single-stranded DNA-binding protein	NA
UHGV-1360432_31	eggNOG-mapper	742767.HMPREF9456_00019	Single-stranded DNA-binding protein	NA
UHGV-1360432_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1360432_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1360432_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1360432_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1360432_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1360432_32	PHROG	phrog_3193	NA	unknown function
UHGV-1360432_32	UniRef90	UniRef90_UPI0018A95222	ASCH domain-containing protein	NA
UHGV-1360432_32	Structural annotation	MF_00684, NF008917, COG3097	NA	NA
UHGV-1360432_36	Structural annotation	TIGR04412	NA	NA
UHGV-1360432_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1360432_38	PHROG	phrog_17622	NA	unknown function
UHGV-1360432_38	UniRef90	UniRef90_A0A395URJ0	ParB N-terminal domain-containing protein	NA
UHGV-1360432_38	eggNOG-mapper	435590.BVU_2842	ParB-like nuclease domain	NA
UHGV-1360432_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1360432_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1360432_39	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1360432_39	eggNOG-mapper	411476.BACOVA_03899	NA	NA
UHGV-1360432_39	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1360432_39	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-1360432_40	PHROG	phrog_16866	NA	unknown function
UHGV-1360432_40	UniRef90	UniRef90_A0A7Y1Y5S7	MgsA_C domain-containing protein	NA
UHGV-1360432_40	eggNOG-mapper	435590.BVU_2840	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-1360432_40	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-1360432_40	Structural annotation	PF12002	NA	NA
UHGV-1360432_41	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1360432_41	UniRef90	UniRef90_A0A4R2LS94	Putative insertion element HTH domain-containing protein	NA
UHGV-1360432_41	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-1360432_41	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1360432_41	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1360432_41	Structural annotation	PF07141	NA	NA
UHGV-1360432_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1360432_42	UniRef90	UniRef90_UPI001E40D079	phage terminase large subunit	NA
UHGV-1360432_42	eggNOG-mapper	1105171.H2A0E8_9CAUD	intein-mediated protein splicing	NA
UHGV-1360432_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1360432_42	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1360432_43	PHROG	phrog_8193	major head protein	head and packaging
UHGV-1360432_43	UniRef90	UniRef90_A0A7U3MWC4	Putative tail protein	NA
UHGV-1360432_43	eggNOG-mapper	1105171.H2A0E7_9CAUD	NA	NA
UHGV-1360432_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1360432_45	PHROG	phrog_7376	portal protein	head and packaging
UHGV-1360432_45	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-1360432_45	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-1360432_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1360432_46	PHROG	phrog_30900	NA	unknown function
UHGV-1360432_48	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-1360432_48	UniRef90	UniRef90_A0A7U3MYE1	Putative capsid associated protein	NA
UHGV-1360432_48	eggNOG-mapper	1176422.I6S6X7_9CAUD	NA	NA
UHGV-1360432_48	Structural annotation	PF21662	NA	NA
UHGV-1360432_49	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-1360432_49	UniRef90	UniRef90_A0A7U3MY95	Major capsid protein	NA
UHGV-1360432_49	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-1360432_49	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1360432_50	PHROG	phrog_8189	NA	unknown function
UHGV-1360432_50	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-1360432_50	Structural annotation	PF02839, NF041539	NA	NA
UHGV-1360432_51	PHROG	phrog_6195	tail protein	tail
UHGV-1360432_51	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-1360432_52	PHROG	phrog_8145	NA	unknown function
UHGV-1360432_52	eggNOG-mapper	99179.B5TRD0_9CAUD	NA	NA
UHGV-1360432_52	Structural annotation	PF08873	NA	NA
UHGV-1360432_53	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-1360432_53	UniRef90	UniRef90_A0A088C4G9	Tail assembly chaperone	NA
UHGV-1360432_53	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-1360432_54	PHROG	phrog_20660	tail length tape measure protein	tail
UHGV-1360432_54	UniRef90	UniRef90_UPI0018A9A239	phage tail tape measure protein	NA
UHGV-1360432_54	eggNOG-mapper	1176422.I6S6Y5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1360432_54	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1360432_54	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1360432_54	Structural annotation	PF10145, PF02321, TIGR01760, COG5280	NA	NA
UHGV-1360432_55	PHROG	phrog_19383	NA	unknown function
UHGV-1360432_55	eggNOG-mapper	1176422.I6R1A9_9CAUD	NA	NA
UHGV-1360432_56	PHROG	phrog_35885	NA	unknown function
UHGV-1360432_56	UniRef90	UniRef90_A0A7U3RL91	Putative tail fiber	NA
UHGV-1360432_56	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA
UHGV-1360432_56	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1360432_57	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1360432_57	PHROG	phrog_11541	NA	unknown function
UHGV-1360432_57	eggNOG-mapper	1121101.HMPREF1532_02611	regulation of response to stimulus	NA
UHGV-1360432_57	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1360432_57	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1360432_58	eggNOG-mapper	484018.BACPLE_02426	Bacteriophage holin family	NA