UHGV-1360730

Genome information

vOTU vOTU-071986

Genome length 59,815 bps

CDS count 108

Completeness 98.65% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1360730
vOTU ID	vOTU-071986
vOTU representative	Yes
Source dataset	GVD
Original genome ID	SRR5495000_NODE_2_length_59815_cov_33.960325
BioSample	NA
Country	Ireland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.07
Jumbo phage	No

Genome content
Genome length	59,815 bps
GC content	37.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	108
CDS density	86.26%
Average CDS length	480.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1360730_1	eggNOG-mapper	1121342.AUCO01000003_gene1501	NA	NA
UHGV-1360730_1	PADLOC	mkCas0106	CAS-I-B; effector_LS	CRISPR-CAS
UHGV-1360730_5	Structural annotation	PF20082	NA	NA
UHGV-1360730_6	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-1360730_11	eggNOG-mapper	1235792.C808_03087	NA	NA
UHGV-1360730_12	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-1360730_12	Structural annotation	PF20352, COG2856	NA	NA
UHGV-1360730_13	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1360730_13	UniRef90	UniRef90_UPI001BC35FCF	Rha family transcriptional regulator	NA
UHGV-1360730_13	eggNOG-mapper	1347392.CCEZ01000060_gene3299	Phage regulatory protein	NA
UHGV-1360730_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1360730_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1360730_13	COG	COG3617	Prophage antirepressor	NA
UHGV-1360730_13	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1360730_15	UniRef90	UniRef90_A0A133NHJ0	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-1360730_15	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-1360730_15	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1360730_16	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-1360730_17	PHROG	phrog_20016	NA	unknown function
UHGV-1360730_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1360730_17	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1360730_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1360730_18	PHROG	phrog_16490	NA	unknown function
UHGV-1360730_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1360730_19	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-1360730_20	PHROG	phrog_21718	NA	unknown function
UHGV-1360730_20	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-1360730_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1360730_22	PHROG	phrog_95	integrase	integration and excision
UHGV-1360730_22	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-1360730_22	eggNOG-mapper	1384065.JAGS01000001_gene1134	NA	NA
UHGV-1360730_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1360730_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-1360730_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1360730_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1360730_22	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1360730_24	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-1360730_24	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1360730_24	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-1360730_26	PHROG	phrog_2776	NA	unknown function
UHGV-1360730_26	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-1360730_26	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1360730_29	PHROG	phrog_8538	NA	unknown function
UHGV-1360730_29	eggNOG-mapper	1151292.QEW_4427	NA	NA
UHGV-1360730_32	PHROG	phrog_13561	NA	unknown function
UHGV-1360730_32	eggNOG-mapper	1121342.AUCO01000012_gene1712	NA	NA
UHGV-1360730_32	Structural annotation	PF03501	NA	NA
UHGV-1360730_34	PHROG	phrog_20593	NA	unknown function
UHGV-1360730_37	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1360730_37	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-1360730_37	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-1360730_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1360730_38	PHROG	phrog_8684	NA	unknown function
UHGV-1360730_38	UniRef90	UniRef90_A0A372UJN3	YopX domain-containing protein	NA
UHGV-1360730_38	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-1360730_38	Pfam	PF09643	YopX protein	YopX
UHGV-1360730_40	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-1360730_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1360730_44	PHROG	phrog_19106	NA	unknown function
UHGV-1360730_44	UniRef90	UniRef90_R7BHG7	GIY-YIG domain-containing protein	NA
UHGV-1360730_44	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1360730_44	Structural annotation	TIGR01453	NA	NA
UHGV-1360730_45	PHROG	phrog_28936	NA	unknown function
UHGV-1360730_45	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1360730_45	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1360730_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1360730_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1360730_46	UniRef90	UniRef90_R9KL32	Single-stranded DNA-binding protein	NA
UHGV-1360730_46	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1360730_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1360730_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1360730_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1360730_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1360730_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1360730_48	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1360730_48	UniRef90	UniRef90_A0A416G2C4	MBL fold metallo-hydrolase	NA
UHGV-1360730_48	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1360730_48	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1360730_48	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1360730_49	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1360730_49	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-1360730_49	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-1360730_49	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1360730_49	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1360730_50	PHROG	phrog_17662	NA	unknown function
UHGV-1360730_50	UniRef90	UniRef90_UPI001899FDF7	radical SAM protein	NA
UHGV-1360730_50	eggNOG-mapper	742735.HMPREF9467_00856	NA	NA
UHGV-1360730_50	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1360730_50	Structural annotation	MF_01225_B, TIGR04334, COG0535	NA	NA
UHGV-1360730_51	PHROG	phrog_25456	NA	unknown function
UHGV-1360730_52	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1360730_52	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-1360730_52	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-1360730_52	Pfam	PF03837	RecT family	RecT
UHGV-1360730_52	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1360730_53	PHROG	phrog_4433	NA	unknown function
UHGV-1360730_53	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-1360730_53	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1360730_53	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1360730_54	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-1360730_55	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1360730_55	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1360730_55	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-1360730_55	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1360730_55	Pfam	PF13476	AAA domain	AAA_23
UHGV-1360730_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1360730_55	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1360730_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1360730_57	PHROG	phrog_26861	NA	unknown function
UHGV-1360730_57	UniRef90	UniRef90_A0A359IM83	Single-stranded DNA-binding protein	NA
UHGV-1360730_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1360730_57	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1360730_58	UniRef90	UniRef90_A0A1Y4F7C9	Spo0A_C domain-containing protein	NA
UHGV-1360730_58	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1360730_58	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1360730_61	PHROG	phrog_21026	NA	unknown function
UHGV-1360730_63	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1360730_63	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-1360730_63	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-1360730_63	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1360730_63	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1360730_63	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-1360730_65	Structural annotation	PF12729	NA	NA
UHGV-1360730_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1360730_66	UniRef90	UniRef90_A0A1C5RZS0	Transcriptional regulator, y4mF family	NA
UHGV-1360730_66	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-1360730_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1360730_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1360730_68	UniRef90	UniRef90_A0A417WCN8	Acyl carrier protein	NA
UHGV-1360730_68	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-1360730_68	Structural annotation	PF14301	NA	NA
UHGV-1360730_70	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-1360730_72	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1360730_72	PHROG	phrog_11157	NA	unknown function
UHGV-1360730_72	UniRef90	UniRef90_D3ABG9	Big_13 domain-containing protein	NA
UHGV-1360730_72	eggNOG-mapper	1304866.K413DRAFT_0771	NA	NA
UHGV-1360730_72	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1360730_72	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1360730_72	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1360730_72	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1360730_73	PHROG	phrog_18725	NA	unknown function
UHGV-1360730_73	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-1360730_73	Structural annotation	PF19077	NA	NA
UHGV-1360730_74	PHROG	phrog_13879	NA	unknown function
UHGV-1360730_74	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1360730_74	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1360730_75	PHROG	phrog_1194	NA	unknown function
UHGV-1360730_75	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1360730_75	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1360730_76	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-1360730_79	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1360730_79	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1360730_79	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1360730_80	KOfam	K07273	acm; lysozyme	NA
UHGV-1360730_80	PHROG	phrog_291	endolysin	lysis
UHGV-1360730_80	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-1360730_80	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-1360730_80	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1360730_80	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1360730_80	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1360730_80	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-1360730_83	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-1360730_83	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1360730_84	Structural annotation	PF05657	NA	NA
UHGV-1360730_85	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1360730_85	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-1360730_85	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-1360730_85	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1360730_86	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1360730_87	PHROG	phrog_1129	holin	lysis
UHGV-1360730_87	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-1360730_87	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1360730_87	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1360730_87	Structural annotation	PF06946	NA	NA
UHGV-1360730_88	PHROG	phrog_1863	NA	unknown function
UHGV-1360730_88	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-1360730_90	Structural annotation	PF21169	NA	NA
UHGV-1360730_91	PHROG	phrog_29	major head protein	head and packaging
UHGV-1360730_91	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-1360730_91	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1360730_91	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1360730_91	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1360730_92	PHROG	phrog_909	major head protein	head and packaging
UHGV-1360730_92	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1360730_93	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-1360730_94	PHROG	phrog_64	portal protein	head and packaging
UHGV-1360730_94	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-1360730_94	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1360730_94	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1360730_94	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1360730_95	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1360730_95	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-1360730_95	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-1360730_95	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1360730_95	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1360730_96	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1360730_96	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-1360730_96	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1360730_96	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1360730_96	COG	COG5410	NA	NA
UHGV-1360730_96	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1360730_100	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1360730_108	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-1360730_108	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA