UHGV-1360792

Genome information

Genome length 42,175 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-1360792
vOTU ID	vOTU-003224
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0279819
BioSample	SAMN05415000
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.58
Jumbo phage	No

Genome content
Genome length	42,175 bps
GC content	42.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	93.27%
Average CDS length	559.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1360792_1	Structural annotation	PF16677	NA	NA
UHGV-1360792_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1360792_2	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-1360792_2	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-1360792_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1360792_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1360792_2	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1360792_2	COG	COG5362	Phage terminase large subunit	NA
UHGV-1360792_2	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1360792_4	PHROG	phrog_156	portal protein	head and packaging
UHGV-1360792_4	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-1360792_4	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1360792_6	PHROG	phrog_267	major head protein	head and packaging
UHGV-1360792_6	UniRef90	UniRef90_A0A4R3KBP0	N4-gp56 family major capsid protein	NA
UHGV-1360792_6	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-1360792_6	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1360792_7	Structural annotation	PF07100, COG4288	NA	NA
UHGV-1360792_9	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1360792_9	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-1360792_9	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1360792_10	PHROG	phrog_21765	NA	unknown function
UHGV-1360792_10	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-1360792_10	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-1360792_10	COG	COG4675	Phage tail collar domain	NA
UHGV-1360792_11	UniRef90	UniRef90_UPI001D07731B	NA	NA
UHGV-1360792_11	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1360792_11	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-1360792_11	Pfam	PF19789	NA	DUF6273
UHGV-1360792_11	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1360792_11	Structural annotation	PF19789	NA	NA
UHGV-1360792_13	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1360792_14	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-1360792_14	PHROG	phrog_18593	NA	unknown function
UHGV-1360792_14	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-1360792_14	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-1360792_14	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1360792_14	Structural annotation	PF14600	NA	NA
UHGV-1360792_18	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-1360792_18	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1360792_18	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1360792_19	PHROG	phrog_4105	NA	unknown function
UHGV-1360792_19	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1360792_19	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-1360792_20	PHROG	phrog_443	holin	lysis
UHGV-1360792_20	UniRef90	UniRef90_A0A1I1Y2T2	Phage r1t holin	NA
UHGV-1360792_20	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1360792_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1360792_20	Structural annotation	PF16945	NA	NA
UHGV-1360792_21	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1360792_21	PHROG	phrog_435	endolysin	lysis
UHGV-1360792_21	UniRef90	UniRef90_B0MAM2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1360792_21	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-1360792_21	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1360792_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1360792_21	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1360792_22	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-1360792_22	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1360792_23	PHROG	phrog_21718	NA	unknown function
UHGV-1360792_23	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1360792_25	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1360792_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1360792_27	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1360792_28	KOfam	K14059	int; integrase	NA
UHGV-1360792_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1360792_28	UniRef90	UniRef90_A0A858BPV1	Site-specific integrase	NA
UHGV-1360792_28	eggNOG-mapper	397290.C810_00805	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1360792_28	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1360792_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1360792_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1360792_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1360792_28	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1360792_30	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1360792_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1360792_32	UniRef90	UniRef90_UPI000BA57F70	helix-turn-helix transcriptional regulator	NA
UHGV-1360792_32	eggNOG-mapper	1462527.CCDM010000003_gene3683	Helix-turn-helix XRE-family like proteins	NA
UHGV-1360792_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1360792_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1360792_33	UniRef90	UniRef90_T5JYM7	Cro/Cl family transcriptional regulator	NA
UHGV-1360792_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1360792_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1360792_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1360792_34	PHROG	phrog_989	NA	unknown function
UHGV-1360792_34	UniRef90	UniRef90_A0A7V7UB01	Helix-turn-helix domain-containing protein	NA
UHGV-1360792_34	eggNOG-mapper	1540257.JQMW01000013_gene708	NA	NA
UHGV-1360792_35	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1360792_35	PHROG	phrog_19349	NA	unknown function
UHGV-1360792_35	UniRef90	UniRef90_UPI000DE563D6	transglycosylase SLT domain-containing protein	NA
UHGV-1360792_35	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-1360792_35	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1360792_35	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1360792_35	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-1360792_38	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1360792_38	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-1360792_38	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-1360792_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1360792_38	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1360792_39	PHROG	phrog_9804	NA	unknown function
UHGV-1360792_39	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-1360792_39	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-1360792_39	AcrCatalog	cluster_137185	NA	NA
UHGV-1360792_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1360792_39	Structural annotation	PF11417	NA	NA
UHGV-1360792_40	PHROG	phrog_2113	NA	unknown function
UHGV-1360792_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1360792_42	UniRef90	UniRef90_UPI001CF85C41	ERF family protein	NA
UHGV-1360792_42	eggNOG-mapper	1462527.CCDM010000010_gene489	ERF superfamily	NA
UHGV-1360792_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-1360792_42	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1360792_43	PHROG	phrog_674	NA	unknown function
UHGV-1360792_43	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-1360792_43	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-1360792_43	Pfam	PF07083	NA	DUF1351
UHGV-1360792_43	Structural annotation	PF07083	NA	NA
UHGV-1360792_44	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1360792_44	UniRef90	UniRef90_UPI001D07AE80	HNH endonuclease	NA
UHGV-1360792_44	eggNOG-mapper	358681.BBR47_35660	HNH endonuclease	NA
UHGV-1360792_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1360792_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1360792_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1360792_46	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1360792_46	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1360792_46	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1360792_48	PHROG	phrog_25385	NA	unknown function
UHGV-1360792_48	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-1360792_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1360792_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1360792_49	UniRef90	UniRef90_A0A645FRU2	Single-stranded DNA-binding protein	NA
UHGV-1360792_49	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-1360792_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1360792_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1360792_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1360792_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1360792_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1360792_53	PHROG	phrog_21026	NA	unknown function
UHGV-1360792_55	PHROG	phrog_419	NA	unknown function
UHGV-1360792_55	UniRef90	UniRef90_A0A0V8CZM6	Phage-associated protein	NA
UHGV-1360792_55	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-1360792_55	Structural annotation	PF14083	NA	NA
UHGV-1360792_56	PHROG	phrog_20593	NA	unknown function
UHGV-1360792_56	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-1360792_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1360792_58	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1360792_58	UniRef90	UniRef90_A0A0R1MQE6	Methyltransferase	NA
UHGV-1360792_58	eggNOG-mapper	574376.BAMA_16525	DNA methylase	NA
UHGV-1360792_58	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1360792_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1360792_58	COG	COG0863	DNA modification methylase	NA
UHGV-1360792_58	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1360792_59	PHROG	phrog_1672	NA	unknown function
UHGV-1360792_61	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1360792_62	PHROG	phrog_10714	NA	unknown function
UHGV-1360792_63	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1360792_63	UniRef90	UniRef90_A0A7V8QMV9	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1360792_63	eggNOG-mapper	1144932.ATTF01000015_gene1210	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1360792_63	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1360792_63	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1360792_65	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1360792_65	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1360792_69	Structural annotation	PF00181	NA	NA
UHGV-1360792_70	Structural annotation	PF17917	NA	NA
UHGV-1360792_71	PHROG	phrog_15863	NA	unknown function
UHGV-1360792_71	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-1360792_71	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1360792_71	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA