UHGV-1362292

Genome information

Genome length 32,413 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9546

Prediction confidence Confident

Genome information
Genome ID	UHGV-1362292
vOTU ID	vOTU-003091
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0225662
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9546
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.57
Jumbo phage	No

Genome content
Genome length	32,413 bps
GC content	44.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.81%
Average CDS length	645.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1362292_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1362292_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1362292_2	UniRef90	UniRef90_A0A350XVB3	HTH cro/C1-type domain-containing protein	NA
UHGV-1362292_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1362292_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1362292_5	PHROG	phrog_8684	NA	unknown function
UHGV-1362292_5	UniRef90	UniRef90_A0A7C7AES7	YopX domain-containing protein	NA
UHGV-1362292_5	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-1362292_5	Pfam	PF09643	YopX protein	YopX
UHGV-1362292_5	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1362292_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1362292_6	PHROG	phrog_3136	NA	unknown function
UHGV-1362292_6	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1362292_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1362292_6	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1362292_8	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1362292_8	PHROG	phrog_11371	NA	unknown function
UHGV-1362292_8	UniRef90	UniRef90_UPI000D938E34	restriction endonuclease subunit M	NA
UHGV-1362292_8	eggNOG-mapper	1122243.KB903781_gene222	Type II restriction enzyme, methylase subunits	NA
UHGV-1362292_8	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1362292_8	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1362292_8	Structural annotation	PF20473, NF041658	NA	NA
UHGV-1362292_9	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1362292_9	UniRef90	UniRef90_A0A414ZQZ4	NAD(P)-dependent oxidoreductase	NA
UHGV-1362292_9	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1362292_9	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1362292_9	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1362292_10	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-1362292_10	eggNOG-mapper	1235792.C808_01809	NA	NA
UHGV-1362292_10	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-1362292_11	UniRef90	UniRef90_A0A1K1LNJ9	UDP-N-acetylglucosamine kinase	NA
UHGV-1362292_11	eggNOG-mapper	1408324.JNJK01000022_gene787	Zeta toxin	NA
UHGV-1362292_11	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-1362292_13	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-1362292_13	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-1362292_13	UniRef90	UniRef90_A0A2B0E860	GTP pyrophosphokinase	NA
UHGV-1362292_13	eggNOG-mapper	1211814.CAPG01000027_gene1280	COG0317 Guanosine polyphosphate pyrophosphohydrolases synthetases	NA
UHGV-1362292_13	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-1362292_13	Structural annotation	PF13328	NA	NA
UHGV-1362292_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1362292_14	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1362292_14	UniRef90	UniRef90_E5BHZ1	Terminase small subunit	NA
UHGV-1362292_14	eggNOG-mapper	1123405.AUMM01000017_gene2713	Terminase, small subunit	NA
UHGV-1362292_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1362292_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1362292_14	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1362292_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1362292_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1362292_15	UniRef90	UniRef90_UPI0008D8FA41	PBSX family phage terminase large subunit	NA
UHGV-1362292_15	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-1362292_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1362292_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-1362292_15	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1362292_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-1362292_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-1362292_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1362292_17	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-1362292_17	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-1362292_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1362292_17	COG	COG2369	NA	NA
UHGV-1362292_17	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1362292_19	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-1362292_19	Structural annotation	PF05065, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1362292_21	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-1362292_22	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-1362292_23	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-1362292_25	Structural annotation	PF09097, TIGR02126	NA	NA
UHGV-1362292_26	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1362292_27	PHROG	phrog_38418	NA	unknown function
UHGV-1362292_27	Structural annotation	PF10651	NA	NA
UHGV-1362292_29	Structural annotation	PF10651	NA	NA
UHGV-1362292_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1362292_33	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1362292_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1362292_37	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1362292_37	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1362292_37	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1362292_37	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1362292_39	PHROG	phrog_774	NA	unknown function
UHGV-1362292_39	Structural annotation	PF10458	NA	NA
UHGV-1362292_40	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1362292_40	UniRef90	UniRef90_UPI0008300977	HNH endonuclease	NA
UHGV-1362292_40	eggNOG-mapper	1444310.JANV01000162_gene1198	HNH endonuclease	NA
UHGV-1362292_40	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1362292_40	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1362292_40	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-1362292_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1362292_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1362292_41	UniRef90	UniRef90_A0A3D5ZRJ4	Single-stranded DNA-binding protein	NA
UHGV-1362292_41	eggNOG-mapper	1042163.BRLA_c046430	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1362292_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1362292_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1362292_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1362292_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1362292_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1362292_42	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1362292_42	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-1362292_42	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-1362292_42	Pfam	PF06356	NA	DUF1064
UHGV-1362292_42	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-1362292_43	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1362292_43	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-1362292_43	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-1362292_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1362292_43	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1362292_46	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA