UHGV-1362749

Genome information

Genome length 31,844 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-1362749
vOTU ID	vOTU-055322
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0222267
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.42
Jumbo phage	No

Genome content
Genome length	31,844 bps
GC content	50.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.59%
Average CDS length	555.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1362749_2	PHROG	phrog_5070	NA	unknown function
UHGV-1362749_2	UniRef90	UniRef90_B0PAM0	Bacterial transferase hexapeptide repeat protein	NA
UHGV-1362749_2	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-1362749_2	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1362749_2	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1362749_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1362749_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1362749_7	eggNOG-mapper	1280696.ATVY01000050_gene2655	Helix-turn-helix	NA
UHGV-1362749_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1362749_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1362749_7	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1362749_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1362749_8	UniRef90	UniRef90_A0A3C2EIN3	HTH cro/C1-type domain-containing protein	NA
UHGV-1362749_8	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-1362749_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1362749_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1362749_8	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1362749_10	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-1362749_10	PHROG	phrog_2737	NA	unknown function
UHGV-1362749_10	UniRef90	UniRef90_UPI000B7DED61	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1362749_10	eggNOG-mapper	742738.HMPREF9460_03724	RelB antitoxin	NA
UHGV-1362749_10	Pfam	PF04221	RelB antitoxin	RelB
UHGV-1362749_10	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1362749_10	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-1362749_10	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-1362749_11	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-1362749_11	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1362749_11	UniRef90	UniRef90_A0A174SDF0	mRNA interferase YafQ	NA
UHGV-1362749_11	eggNOG-mapper	457412.RSAG_00125	addiction module toxin, RelE StbE family	NA
UHGV-1362749_11	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-1362749_11	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-1362749_11	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-1362749_11	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-1362749_13	KOfam	K14059	int; integrase	NA
UHGV-1362749_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1362749_13	UniRef90	UniRef90_A0A3C0QRZ0	Tyr recombinase domain-containing protein	NA
UHGV-1362749_13	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-1362749_13	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1362749_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1362749_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1362749_13	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1362749_14	PHROG	phrog_443	holin	lysis
UHGV-1362749_14	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-1362749_14	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1362749_14	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1362749_14	Structural annotation	PF16945	NA	NA
UHGV-1362749_16	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1362749_16	PHROG	phrog_894	endolysin	lysis
UHGV-1362749_16	UniRef90	UniRef90_A0A1C6AVQ8	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-1362749_16	eggNOG-mapper	573061.Clocel_3512	Peptidase M15	NA
UHGV-1362749_16	Pfam	PF08823	Putative peptidoglycan binding domain	PG_binding_2
UHGV-1362749_16	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1362749_16	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1362749_16	COG	COG3108	NA	NA
UHGV-1362749_16	Structural annotation	PF05951, PF01471, TIGR02869, COG3108, COG3409	NA	NA
UHGV-1362749_18	PHROG	phrog_5555	tail protein	tail
UHGV-1362749_18	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-1362749_18	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-1362749_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1362749_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1362749_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1362749_18	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-1362749_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1362749_19	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-1362749_19	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1362749_20	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1362749_20	UniRef90	UniRef90_UPI000E4708D5	phage tail tape measure protein	NA
UHGV-1362749_20	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-1362749_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1362749_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1362749_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1362749_21	PHROG	phrog_706	NA	unknown function
UHGV-1362749_21	UniRef90	UniRef90_A0A6N3ADJ1	Bacteriophage Gp15 protein	NA
UHGV-1362749_21	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-1362749_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1362749_21	Structural annotation	PF06854	NA	NA
UHGV-1362749_22	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-1362749_22	Structural annotation	PF10666	NA	NA
UHGV-1362749_23	PHROG	phrog_820	major tail protein	tail
UHGV-1362749_23	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1362749_23	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1362749_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1362749_23	COG	COG5492	NA	NA
UHGV-1362749_23	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-1362749_24	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1362749_24	Structural annotation	PF12691	NA	NA
UHGV-1362749_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1362749_25	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-1362749_25	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1362749_25	Structural annotation	PF11114	NA	NA
UHGV-1362749_26	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1362749_26	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1362749_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1362749_27	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-1362749_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-1362749_28	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1362749_28	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1362749_28	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1362749_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1362749_33	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-1362749_33	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1362749_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1362749_33	COG	COG2369	NA	NA
UHGV-1362749_33	Structural annotation	PF06152	NA	NA
UHGV-1362749_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-1362749_34	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-1362749_34	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1362749_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1362749_34	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1362749_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1362749_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1362749_35	PHROG	phrog_29775	NA	unknown function
UHGV-1362749_35	UniRef90	UniRef90_A0A316T8R1	PBSX family phage terminase large subunit	NA
UHGV-1362749_35	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-1362749_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1362749_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1362749_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1362749_35	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1362749_36	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-1362749_36	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1362749_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1362749_40	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-1362749_40	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1362749_40	Structural annotation	PF18909	NA	NA
UHGV-1362749_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1362749_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1362749_41	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-1362749_41	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-1362749_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-1362749_41	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1362749_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1362749_41	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1362749_42	NCBIFam	NF038108.1	Cys-every-fifth RiPP peptide CefA	NA
UHGV-1362749_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1362749_43	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1362749_43	UniRef90	UniRef90_A7VTC7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1362749_43	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1362749_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1362749_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1362749_43	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1362749_45	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1362749_45	UniRef90	UniRef90_A0A4P8I8N3	DnaD domain protein	NA
UHGV-1362749_45	eggNOG-mapper	1121335.Clst_0376	DnaD domain protein	NA
UHGV-1362749_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1362749_45	Structural annotation	PF04492, MF_01584, TIGR01610, TIGR02220, COG5625	NA	NA
UHGV-1362749_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1362749_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1362749_46	UniRef90	UniRef90_A0A8F2JB44	Single-stranded DNA-binding protein	NA
UHGV-1362749_46	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1362749_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1362749_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1362749_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1362749_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1362749_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1362749_47	PHROG	phrog_7566	NA	unknown function
UHGV-1362749_47	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1362749_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1362749_48	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-1362749_48	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1362749_48	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1362749_49	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1362749_49	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1362749_50	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1362749_50	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-1362749_50	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1362749_50	Pfam	PF06378	NA	DUF1071
UHGV-1362749_50	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA