UHGV-1363447

Genome information

Genome length 55,001 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-1363447
vOTU ID	vOTU-055442
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0321746
BioSample	SAMEA4545340
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.5
Jumbo phage	No

Genome content
Genome length	55,001 bps
GC content	42.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.17%
Average CDS length	816.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1363447_3	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-1363447_3	PHROG	phrog_12508	NA	unknown function
UHGV-1363447_3	UniRef90	UniRef90_A0A7X6VJF0	M23 family metallopeptidase	NA
UHGV-1363447_3	eggNOG-mapper	1487921.DP68_05500	NLP P60 protein	NA
UHGV-1363447_3	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1363447_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1363447_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1363447_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1363447_4	PHROG	phrog_670	endolysin	lysis
UHGV-1363447_4	UniRef90	UniRef90_UPI0015A79365	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1363447_4	eggNOG-mapper	1041504.RATSFB_1339	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1363447_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1363447_4	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1363447_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1363447_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1363447_5	PHROG	phrog_263	holin	lysis
UHGV-1363447_5	UniRef90	UniRef90_UPI001F05AFD4	phage holin	NA
UHGV-1363447_5	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-1363447_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1363447_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1363447_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1363447_6	PHROG	phrog_1863	NA	unknown function
UHGV-1363447_6	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-1363447_6	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1363447_9	PHROG	phrog_16573	NA	unknown function
UHGV-1363447_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1363447_10	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-1363447_10	PHROG	phrog_35892	NA	unknown function
UHGV-1363447_10	eggNOG-mapper	665956.HMPREF1032_03260	NA	NA
UHGV-1363447_10	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1363447_10	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1363447_11	Structural annotation	PF09144, NF038393	NA	NA
UHGV-1363447_15	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1363447_15	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1363447_15	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-1363447_16	Structural annotation	PF20387	NA	NA
UHGV-1363447_18	PHROG	phrog_14242	major head protein	head and packaging
UHGV-1363447_18	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-1363447_18	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-1363447_18	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1363447_18	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-1363447_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-1363447_20	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-1363447_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1363447_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1363447_23	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1363447_23	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-1363447_23	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-1363447_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1363447_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1363447_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1363447_24	Structural annotation	PF06056, COG2963	NA	NA
UHGV-1363447_25	KOfam	K14059	int; integrase	NA
UHGV-1363447_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1363447_25	UniRef90	UniRef90_A0A7X5KR99	Site-specific integrase	NA
UHGV-1363447_25	eggNOG-mapper	1045004.OKIT_0416	Belongs to the 'phage' integrase family	NA
UHGV-1363447_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1363447_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1363447_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1363447_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1363447_26	eggNOG-mapper	1235802.C823_02972	competence protein COMEC	NA
UHGV-1363447_26	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1363447_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1363447_29	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1363447_29	Structural annotation	PF13058, PF02805, COG2856	NA	NA
UHGV-1363447_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1363447_30	UniRef90	UniRef90_A0A658JJ51	XRE family transcriptional regulator	NA
UHGV-1363447_30	eggNOG-mapper	742733.HMPREF9469_04846	sequence-specific DNA binding	NA
UHGV-1363447_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1363447_37	Structural annotation	COG5377	NA	NA
UHGV-1363447_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1363447_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1363447_38	UniRef90	UniRef90_UPI000B340F5B	DEAD/DEAH box helicase	NA
UHGV-1363447_38	eggNOG-mapper	375286.mma_2750	Helicase	NA
UHGV-1363447_38	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1363447_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1363447_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1363447_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1363447_38	Structural annotation	PF04851, PF00271, MF_00967, TIGR04095, COG1061	NA	NA
UHGV-1363447_39	PHROG	phrog_398	NA	unknown function
UHGV-1363447_39	UniRef90	UniRef90_A0A1M7MXJ5	Putative HNHc nuclease	NA
UHGV-1363447_39	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-1363447_39	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1363447_39	Structural annotation	PF16784	NA	NA
UHGV-1363447_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1363447_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1363447_42	UniRef90	UniRef90_UPI001CF8FEA9	single-stranded DNA-binding protein	NA
UHGV-1363447_42	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-1363447_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1363447_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1363447_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1363447_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1363447_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1363447_43	PHROG	phrog_4973	NA	unknown function
UHGV-1363447_43	UniRef90	UniRef90_UPI00164C643F	helix-turn-helix domain-containing protein	NA
UHGV-1363447_43	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1363447_43	Structural annotation	PF14090, TIGR00373, COG5625	NA	NA
UHGV-1363447_44	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1363447_44	UniRef90	UniRef90_A0A7Y9A651	DnaD/phage-associated family protein	NA
UHGV-1363447_44	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-1363447_44	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1363447_44	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1363447_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1363447_44	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1363447_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1363447_45	UniRef90	UniRef90_UPI0008DAD561	NA	NA
UHGV-1363447_45	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-1363447_45	Pfam	PF06356	NA	DUF1064
UHGV-1363447_45	Structural annotation	PF06356	NA	NA
UHGV-1363447_47	PHROG	phrog_8684	NA	unknown function
UHGV-1363447_47	UniRef90	UniRef90_I8VW20	YopX domain-containing protein	NA
UHGV-1363447_47	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-1363447_47	Pfam	PF09643	YopX protein	YopX
UHGV-1363447_47	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1363447_48	PHROG	phrog_10714	NA	unknown function
UHGV-1363447_48	eggNOG-mapper	1123263.AUKY01000015_gene1588	NA	NA
UHGV-1363447_53	Structural annotation	PF02050	NA	NA
UHGV-1363447_57	Structural annotation	PF09871, COG4014	NA	NA
UHGV-1363447_58	PHROG	phrog_31569	NA	unknown function
UHGV-1363447_59	PHROG	phrog_15077	NA	unknown function
UHGV-1363447_59	eggNOG-mapper	478749.BRYFOR_05435	NA	NA
UHGV-1363447_59	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1363447_61	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1363447_61	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-1363447_61	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-1363447_61	Structural annotation	PF04545	NA	NA
UHGV-1363447_62	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-1363447_62	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-1363447_62	UniRef90	UniRef90_A0A1Y4F322	dUTPase domain-containing protein	NA
UHGV-1363447_62	eggNOG-mapper	1410674.JNKU01000001_gene210	Belongs to the dCTP deaminase family	NA
UHGV-1363447_62	Pfam	PF00692	dUTPase	dUTPase
UHGV-1363447_62	COG	COG0717	dCTP deaminase	NA
UHGV-1363447_62	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-1363447_63	PHROG	phrog_9854	NA	unknown function
UHGV-1363447_63	eggNOG-mapper	268407.PWYN_12490	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-1363447_63	Pfam	PF01624	MutS domain I	MutS_I
UHGV-1363447_63	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1363447_63	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1363447_63	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1363447_63	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA