UHGV-1364467

Genome information

Genome length 34,389 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-1364467
vOTU ID	vOTU-055614
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0235632
BioSample	SAMEA2738125
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.46
Jumbo phage	No

Genome content
Genome length	34,389 bps
GC content	65.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.22%
Average CDS length	662.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1364467_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1364467_1	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-1364467_1	UniRef90	UniRef90_UPI001C669B84	helix-turn-helix domain-containing protein	NA
UHGV-1364467_1	eggNOG-mapper	1121360.AUAQ01000019_gene2118	Helix-turn-helix XRE-family like proteins	NA
UHGV-1364467_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1364467_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1364467_2	UniRef90	UniRef90_UPI001CA4D40D	helix-turn-helix domain-containing protein	NA
UHGV-1364467_2	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1364467_3	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-1364467_3	UniRef90	UniRef90_A0A1S1EMF7	HTH_17 domain-containing protein	NA
UHGV-1364467_3	eggNOG-mapper	572477.Alvin_1700	Helix-turn-helix domain	NA
UHGV-1364467_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1364467_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1364467_3	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1364467_4	eggNOG-mapper	864069.MicloDRAFT_00001210	NA	NA
UHGV-1364467_9	UniRef90	UniRef90_X6PWR3	Putative lipoprotein	NA
UHGV-1364467_9	Structural annotation	PF08410	NA	NA
UHGV-1364467_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1364467_11	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1364467_11	UniRef90	UniRef90_A0A1S1EMP2	ParB domain-containing protein	NA
UHGV-1364467_11	eggNOG-mapper	1115632.JAFW01000002_gene4675	Belongs to the ParB family	NA
UHGV-1364467_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1364467_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1364467_11	Structural annotation	PF02195, PF12793, MF_02015, MF_01819, TIGR00180, NF033788, COG1475, COG1959	NA	NA
UHGV-1364467_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1364467_14	PHROG	phrog_9203	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1364467_14	UniRef90	UniRef90_A0A1L7R8X3	Crossover junction endodeoxyribonuclease, RusA-like	NA
UHGV-1364467_14	eggNOG-mapper	521393.JH806633_gene1248	NA	NA
UHGV-1364467_14	Structural annotation	NF007305, COG4570	NA	NA
UHGV-1364467_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1364467_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1364467_15	UniRef90	UniRef90_UPI001C665E61	single-stranded DNA-binding protein	NA
UHGV-1364467_15	eggNOG-mapper	1105029.HMPREF1137_1957	Single-stranded DNA-binding protein	NA
UHGV-1364467_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1364467_15	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1364467_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1364467_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1364467_15	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1364467_17	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1364467_17	UniRef90	UniRef90_A0A1S1EPJ6	HNHc domain-containing protein	NA
UHGV-1364467_17	eggNOG-mapper	1429046.RR21198_3140	endonuclease activity	NA
UHGV-1364467_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1364467_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1364467_18	PHROG	phrog_1467	NA	unknown function
UHGV-1364467_18	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1364467_20	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1364467_20	UniRef90	UniRef90_A0A2W4J7S9	DNA primase	NA
UHGV-1364467_20	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1364467_20	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1364467_20	Structural annotation	PF09250	NA	NA
UHGV-1364467_21	PHROG	phrog_226	minor tail protein	tail
UHGV-1364467_21	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1364467_21	eggNOG-mapper	1287475.HMPREF1650_04200	NA	NA
UHGV-1364467_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1364467_22	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1364467_22	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1364467_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1364467_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1364467_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-1364467_23	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-1364467_23	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1364467_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1364467_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1364467_24	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1364467_24	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-1364467_24	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1364467_24	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1364467_24	Structural annotation	PF18451	NA	NA
UHGV-1364467_25	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1364467_25	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1364467_25	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-1364467_26	PHROG	phrog_267	major head protein	head and packaging
UHGV-1364467_26	UniRef90	UniRef90_A0A7D0KIS5	Major capsid protein-like protein	NA
UHGV-1364467_26	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1364467_26	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1364467_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1364467_28	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1364467_28	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1364467_28	Structural annotation	TIGR02215	NA	NA
UHGV-1364467_29	PHROG	phrog_501	head closure Hc1	connector
UHGV-1364467_29	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1364467_30	PHROG	phrog_16886	NA	unknown function
UHGV-1364467_30	UniRef90	UniRef90_UPI001552BA5E	HK97 gp10 family phage protein	NA
UHGV-1364467_30	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1364467_31	PHROG	phrog_37847	NA	unknown function
UHGV-1364467_31	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1364467_32	PHROG	phrog_476	major tail protein	tail
UHGV-1364467_32	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1364467_32	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1364467_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1364467_34	PHROG	phrog_24495	NA	unknown function
UHGV-1364467_36	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1364467_36	PHROG	phrog_971	endolysin	lysis
UHGV-1364467_36	UniRef90	UniRef90_A0A1S1ELJ1	NlpC/P60 domain-containing protein	NA
UHGV-1364467_36	eggNOG-mapper	1680.BADO_1579	phage tail tape measure protein	NA
UHGV-1364467_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1364467_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1364467_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1364467_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1364467_36	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1364467_37	PHROG	phrog_30446	NA	unknown function
UHGV-1364467_37	Structural annotation	PF00629, PF06995, NF033675, TIGR01633, COG3499	NA	NA
UHGV-1364467_38	PHROG	phrog_1887	tail protein	tail
UHGV-1364467_38	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1364467_38	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1364467_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1364467_39	PHROG	phrog_32674	NA	unknown function
UHGV-1364467_39	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1364467_40	PHROG	phrog_31345	NA	unknown function
UHGV-1364467_40	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1364467_42	PHROG	phrog_21825	endolysin	lysis
UHGV-1364467_42	UniRef90	UniRef90_UPI001C68242F	CHAP domain-containing protein	NA
UHGV-1364467_42	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1364467_42	Pfam	PF05257	CHAP domain	CHAP
UHGV-1364467_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1364467_42	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1364467_43	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1364467_44	PHROG	phrog_15808	NA	unknown function
UHGV-1364467_44	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1364467_45	PHROG	phrog_28842	NA	unknown function
UHGV-1364467_45	Structural annotation	PF08400, TIGR04134, COG3126	NA	NA
UHGV-1364467_46	PHROG	phrog_30808	NA	unknown function
UHGV-1364467_46	UniRef90	UniRef90_A0A7U0HMP2	Collagen-like protein	NA
UHGV-1364467_47	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1364467_47	PHROG	phrog_17803	phosphodiesterase	other
UHGV-1364467_47	UniRef90	UniRef90_A0A1S1ELK3	GP-PDE domain-containing protein	NA
UHGV-1364467_47	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-1364467_47	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1364467_47	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1364467_47	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-1364467_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1364467_48	PHROG	phrog_1	integrase	integration and excision
UHGV-1364467_48	UniRef90	UniRef90_UPI001CA4BDAC	tyrosine-type recombinase/integrase	NA
UHGV-1364467_48	eggNOG-mapper	926564.KI911740_gene3383	Belongs to the 'phage' integrase family	NA
UHGV-1364467_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1364467_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1364467_48	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA