UHGV-1364562

Genome information

Genome length 32,318 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1364562
vOTU ID	vOTU-055630
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0224863
BioSample	SAMEA2738166
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.92
Jumbo phage	No

Genome content
Genome length	32,318 bps
GC content	50.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.73%
Average CDS length	574.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1364562_1	PHROG	phrog_7405	NA	unknown function
UHGV-1364562_1	UniRef90	UniRef90_A0A5D8QH29	Chromosome partitioning protein ParB	NA
UHGV-1364562_1	eggNOG-mapper	146922.JOFU01000008_gene3034	ParB-like nuclease domain	NA
UHGV-1364562_2	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1364562_2	UniRef90	UniRef90_A0A3N0WK81	Terminase	NA
UHGV-1364562_2	eggNOG-mapper	992406.RIA_0201	transposase activity	NA
UHGV-1364562_2	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1364562_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1364562_2	Structural annotation	PF07141	NA	NA
UHGV-1364562_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1364562_3	PHROG	phrog_10250	NA	unknown function
UHGV-1364562_3	UniRef90	UniRef90_A0A1M5TVR6	Phage terminase, large subunit, PBSX family	NA
UHGV-1364562_3	eggNOG-mapper	768710.DesyoDRAFT_5225	TIGRFAM Phage terminase, large subunit, PBSX	NA
UHGV-1364562_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1364562_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1364562_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1364562_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1364562_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-1364562_4	UniRef90	UniRef90_A0A345MKB8	Portal protein	NA
UHGV-1364562_4	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-1364562_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1364562_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1364562_5	UniRef90	UniRef90_A0A345MKC2	Minor capsid protein	NA
UHGV-1364562_5	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-1364562_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1364562_5	COG	COG2369	NA	NA
UHGV-1364562_5	Structural annotation	PF06152	NA	NA
UHGV-1364562_9	PHROG	phrog_267	major head protein	head and packaging
UHGV-1364562_9	UniRef90	UniRef90_A0A7X7VRL6	P22 coat protein - protein 5 domain protein	NA
UHGV-1364562_9	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-1364562_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1364562_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1364562_11	Structural annotation	PF20536	NA	NA
UHGV-1364562_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1364562_12	UniRef90	UniRef90_A0A345MKD3	Minor capsid protein	NA
UHGV-1364562_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1364562_12	Structural annotation	PF11114	NA	NA
UHGV-1364562_13	PHROG	phrog_3266	tail completion	connector
UHGV-1364562_14	PHROG	phrog_3099	NA	unknown function
UHGV-1364562_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1364562_16	PHROG	phrog_706	NA	unknown function
UHGV-1364562_16	UniRef90	UniRef90_UPI001655B79C	Gp15 family bacteriophage protein	NA
UHGV-1364562_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1364562_16	Structural annotation	PF06854	NA	NA
UHGV-1364562_17	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1364562_17	UniRef90	UniRef90_A0A6B9SV28	Putative tape measure protein	NA
UHGV-1364562_17	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-1364562_17	COG	COG5412	Phage-related protein	NA
UHGV-1364562_17	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1364562_18	PHROG	phrog_5577	minor tail protein	tail
UHGV-1364562_18	UniRef90	UniRef90_A0A087B697	Putative phage protein gp15	NA
UHGV-1364562_18	eggNOG-mapper	1394176.AWUO01000014_gene652	NA	NA
UHGV-1364562_18	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1364562_19	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-1364562_19	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-1364562_19	eggNOG-mapper	1125712.HMPREF1316_2359	NA	NA
UHGV-1364562_19	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-1364562_20	PHROG	phrog_1885	minor tail protein	tail
UHGV-1364562_20	eggNOG-mapper	1125712.HMPREF1316_2358	NA	NA
UHGV-1364562_20	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1364562_21	PHROG	phrog_30068	NA	unknown function
UHGV-1364562_21	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-1364562_23	PHROG	phrog_443	holin	lysis
UHGV-1364562_23	UniRef90	UniRef90_UPI000A26D838	holin	NA
UHGV-1364562_23	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-1364562_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1364562_23	Structural annotation	PF16945	NA	NA
UHGV-1364562_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1364562_24	PHROG	phrog_14048	endolysin	lysis
UHGV-1364562_24	UniRef90	UniRef90_B9CLI8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1364562_24	eggNOG-mapper	553184.ATORI0001_1164	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1364562_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1364562_24	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1364562_24	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1364562_24	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-1364562_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1364562_25	UniRef90	UniRef90_UPI001CF85C41	ERF family protein	NA
UHGV-1364562_25	eggNOG-mapper	99179.B5TRA2_9CAUD	ERF superfamily	NA
UHGV-1364562_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-1364562_25	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1364562_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1364562_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1364562_26	UniRef90	UniRef90_A0A6N6NPP1	Single-stranded DNA-binding protein	NA
UHGV-1364562_26	eggNOG-mapper	445975.COLSTE_01126	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1364562_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1364562_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1364562_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1364562_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1364562_26	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1364562_27	eggNOG-mapper	1235794.C811_01346	NA	NA
UHGV-1364562_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1364562_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1364562_29	UniRef90	UniRef90_A0A8D5ZQ74	Endonuclease	NA
UHGV-1364562_29	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-1364562_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1364562_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1364562_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1364562_30	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1364562_30	UniRef90	UniRef90_UPI0013EA84CB	PD-(D/E)XK nuclease family protein	NA
UHGV-1364562_30	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-1364562_30	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1364562_30	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-1364562_31	Structural annotation	PF02559, TIGR03318, COG1329	NA	NA
UHGV-1364562_32	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1364562_32	UniRef90	UniRef90_UPI001C9E77A5	conserved phage C-terminal domain-containing protein	NA
UHGV-1364562_32	eggNOG-mapper	1121090.KB894719_gene1107	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1364562_32	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1364562_32	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1364562_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1364562_32	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-1364562_33	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1364562_33	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1364562_33	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-1364562_33	eggNOG-mapper	1410625.JHWK01000005_gene1316	IstB-like ATP binding protein	NA
UHGV-1364562_33	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1364562_33	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1364562_33	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1364562_33	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-1364562_35	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1364562_35	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1364562_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1364562_35	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1364562_37	PHROG	phrog_28142	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1364562_37	eggNOG-mapper	1111121.HMPREF1247_0042	NA	NA
UHGV-1364562_41	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-1364562_46	Structural annotation	PF02559, TIGR03318, COG1329	NA	NA
UHGV-1364562_49	PHROG	phrog_1569	NA	unknown function
UHGV-1364562_49	UniRef90	UniRef90_UPI001F19F054	S-adenosylmethionine synthetase	NA
UHGV-1364562_49	eggNOG-mapper	665956.HMPREF1032_02279	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-1364562_49	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-1364562_49	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-1364562_49	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-1364562_50	PHROG	phrog_2450	NA	unknown function
UHGV-1364562_50	UniRef90	UniRef90_A0A7C9LBA0	NA	NA
UHGV-1364562_50	eggNOG-mapper	411901.BACCAC_01161	NA	NA
UHGV-1364562_50	Pfam	PF04343	NA	DUF488
UHGV-1364562_52	PHROG	phrog_7858	NA	unknown function
UHGV-1364562_52	UniRef90	UniRef90_UPI0014872BB8	peptidoglycan-binding protein	NA
UHGV-1364562_52	eggNOG-mapper	1200557.JHWV01000006_gene1735	NA	NA
UHGV-1364562_52	Structural annotation	PF11039, PF03602, MF_02125, MF_00084, NF007527, TIGR00571, COG3981, COG0338	NA	NA
UHGV-1364562_53	PHROG	phrog_7405	NA	unknown function
UHGV-1364562_53	eggNOG-mapper	146922.JOFU01000008_gene3034	ParB-like nuclease domain	NA