UHGV-1366667

Genome information

Genome length 38,131 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9634

Prediction confidence Confident

Genome information
Genome ID	UHGV-1366667
vOTU ID	vOTU-003647
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258528
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9634
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.88
Jumbo phage	No

Genome content
Genome length	38,131 bps
GC content	67.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.91%
Average CDS length	689.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1366667_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1366667_1	PHROG	phrog_971	endolysin	lysis
UHGV-1366667_1	UniRef90	UniRef90_A0A1Q8W367	NlpC/P60 domain-containing protein	NA
UHGV-1366667_1	eggNOG-mapper	521393.JH806633_gene1285	tape measure	NA
UHGV-1366667_1	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1366667_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1366667_2	PHROG	phrog_30446	NA	unknown function
UHGV-1366667_3	PHROG	phrog_1887	tail protein	tail
UHGV-1366667_3	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1366667_3	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1366667_3	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1366667_4	PHROG	phrog_32674	NA	unknown function
UHGV-1366667_4	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1366667_6	PHROG	phrog_31345	NA	unknown function
UHGV-1366667_6	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1366667_7	KOfam	K07273	acm; lysozyme	NA
UHGV-1366667_7	PHROG	phrog_291	endolysin	lysis
UHGV-1366667_7	UniRef90	UniRef90_U1RWY8	Glycosyl hydrolase family 25	NA
UHGV-1366667_7	eggNOG-mapper	1125712.HMPREF1316_2132	CW_7 repeat	NA
UHGV-1366667_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1366667_7	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1366667_7	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1366667_8	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1366667_9	PHROG	phrog_3534	NA	unknown function
UHGV-1366667_9	eggNOG-mapper	883077.HMPREF9241_01714	NA	NA
UHGV-1366667_11	KOfam	K14059	int; integrase	NA
UHGV-1366667_11	PHROG	phrog_1	integrase	integration and excision
UHGV-1366667_11	UniRef90	UniRef90_U1RX88	Site-specific recombinase, phage integrase family	NA
UHGV-1366667_11	eggNOG-mapper	525246.HMPREF0058_0039	DNA integration	NA
UHGV-1366667_11	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1366667_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1366667_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1366667_11	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-1366667_12	PHROG	phrog_87	metallo-protease	other
UHGV-1366667_12	UniRef90	UniRef90_UPI000FD969D5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1366667_12	eggNOG-mapper	1284679.HMPREF1626_08645	Zn peptidase	NA
UHGV-1366667_12	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1366667_13	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1366667_13	UniRef90	UniRef90_A0A508BKH8	Helix-turn-helix transcriptional regulator	NA
UHGV-1366667_14	eggNOG-mapper	158787.BSCA_1902	NA	NA
UHGV-1366667_14	Structural annotation	PF07092, NF011813, COG5608	NA	NA
UHGV-1366667_15	UniRef90	UniRef90_UPI000CA0720A	helix-turn-helix domain-containing protein	NA
UHGV-1366667_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1366667_19	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1366667_19	UniRef90	UniRef90_A0A1Q8W330	ParB domain-containing protein	NA
UHGV-1366667_19	eggNOG-mapper	1454010.JEOE01000045_gene1506	ParB domain protein nuclease	NA
UHGV-1366667_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1366667_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1366667_19	Structural annotation	PF02195, PF12793, MF_02015, MF_01819, TIGR00180, NF033788, COG1475, COG1959	NA	NA
UHGV-1366667_20	PHROG	phrog_12598	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1366667_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1366667_23	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1366667_23	UniRef90	UniRef90_A0A1L7R8X3	Crossover junction endodeoxyribonuclease, RusA-like	NA
UHGV-1366667_23	eggNOG-mapper	479433.Caci_3038	NA	NA
UHGV-1366667_23	Structural annotation	NF007305, COG4570	NA	NA
UHGV-1366667_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1366667_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1366667_27	UniRef90	UniRef90_A0A1Q8W383	Single-stranded DNA-binding protein	NA
UHGV-1366667_27	eggNOG-mapper	562973.HMPREF0059_01205	Single-stranded DNA-binding protein	NA
UHGV-1366667_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1366667_27	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1366667_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1366667_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1366667_27	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1366667_28	PHROG	phrog_26098	NA	unknown function
UHGV-1366667_28	UniRef90	UniRef90_A0A3S9UNE5	HNH endonuclease	NA
UHGV-1366667_28	eggNOG-mapper	1029824.AFID01000001_gene1964	HNH endonuclease	NA
UHGV-1366667_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1366667_28	Structural annotation	COG1403	NA	NA
UHGV-1366667_31	PHROG	phrog_1467	NA	unknown function
UHGV-1366667_31	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1366667_33	UniRef90	UniRef90_A0A087B4L9	Orf2	NA
UHGV-1366667_33	eggNOG-mapper	151537.Q77JL4_9CAUD	NA	NA
UHGV-1366667_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1366667_34	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1366667_34	UniRef90	UniRef90_U1RIA4	HNH endonuclease domain protein	NA
UHGV-1366667_34	eggNOG-mapper	1160718.SU9_10529	HNH nucleases	NA
UHGV-1366667_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1366667_35	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1366667_35	UniRef90	UniRef90_A0A2W4J7S9	DNA primase	NA
UHGV-1366667_35	eggNOG-mapper	1415166.NONO_c60680	Phage plasmid primase, P4 family domain protein	NA
UHGV-1366667_35	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1366667_35	Structural annotation	PF09250	NA	NA
UHGV-1366667_36	PHROG	phrog_226	minor tail protein	tail
UHGV-1366667_36	eggNOG-mapper	1287475.HMPREF1650_04200	NA	NA
UHGV-1366667_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1366667_37	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1366667_37	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1366667_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1366667_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1366667_38	PHROG	phrog_104	portal protein	head and packaging
UHGV-1366667_38	UniRef90	UniRef90_A0A8F2VUM9	Phage portal protein	NA
UHGV-1366667_38	eggNOG-mapper	36809.MAB_1786	NA	NA
UHGV-1366667_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1366667_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1366667_39	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1366667_39	UniRef90	UniRef90_U1S0J5	CdiA_C domain-containing protein	NA
UHGV-1366667_39	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1366667_39	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1366667_39	Structural annotation	PF18451	NA	NA
UHGV-1366667_40	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1366667_40	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1366667_40	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-1366667_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-1366667_41	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1366667_41	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1366667_41	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1366667_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1366667_43	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1366667_43	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1366667_43	eggNOG-mapper	1097752.G8J7K9_9CAUD	NA	NA
UHGV-1366667_43	Structural annotation	TIGR02215	NA	NA
UHGV-1366667_44	PHROG	phrog_501	head closure Hc1	connector
UHGV-1366667_44	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1366667_45	PHROG	phrog_16886	NA	unknown function
UHGV-1366667_45	UniRef90	UniRef90_A0A853EGK4	HK97 gp10 family phage protein	NA
UHGV-1366667_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1366667_45	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1366667_46	PHROG	phrog_37847	NA	unknown function
UHGV-1366667_46	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1366667_47	PHROG	phrog_476	major tail protein	tail
UHGV-1366667_47	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1366667_47	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1366667_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1366667_49	PHROG	phrog_24495	NA	unknown function
UHGV-1366667_50	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-1366667_50	eggNOG-mapper	1101188.KI912155_gene1857	NA	NA
UHGV-1366667_51	eggNOG-mapper	742742.HMPREF9452_01294	phage tail tape measure protein	NA
UHGV-1366667_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1366667_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA