UHGV-1366856

Genome information

Genome length 49,222 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-1366856
vOTU ID	vOTU-056000
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0308200
BioSample	SAMEA2582061
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.3
Jumbo phage	No

Genome content
Genome length	49,222 bps
GC content	31.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.97%
Average CDS length	735.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1366856_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1366856_1	eggNOG-mapper	1273742.M1HNB2_9CAUD	DNA helicase activity	NA
UHGV-1366856_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1366856_2	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1366856_2	UniRef90	UniRef90_UPI000DCA7C39	CHC2 zinc finger domain-containing protein	NA
UHGV-1366856_2	eggNOG-mapper	574087.Acear_0692	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1366856_2	PADLOC	drt-UG29	DRT	DRT
UHGV-1366856_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1366856_2	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1366856_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1366856_2	Structural annotation	PF01807, PF13155, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1366856_3	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1366856_3	eggNOG-mapper	340099.Teth39_0821	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-1366856_3	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1366856_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1366856_4	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1366856_4	UniRef90	UniRef90_A0A3P6KFK5	MazG family protein	NA
UHGV-1366856_4	eggNOG-mapper	935948.KE386495_gene1342	MazG nucleotide pyrophosphohydrolase	NA
UHGV-1366856_4	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1366856_4	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1366856_4	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1366856_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-1366856_6	UniRef90	UniRef90_UPI001B2E6258	NA	NA
UHGV-1366856_6	eggNOG-mapper	1497679.EP56_05680	NA	NA
UHGV-1366856_6	Pfam	PF11753	NA	DUF3310
UHGV-1366856_8	PHROG	phrog_517	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1366856_9	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1366856_9	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1366856_9	UniRef90	UniRef90_A0A1H7YHN9	DNA polymerase III subunit alpha	NA
UHGV-1366856_9	eggNOG-mapper	1158318.ATXC01000002_gene1498	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1366856_9	Pfam	PF02811	PHP domain	PHP
UHGV-1366856_9	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1366856_9	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1366856_9	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1366856_9	Pfam	PF01336	OB-fold nucleic acid binding domain	tRNA_anti-codon
UHGV-1366856_9	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1366856_9	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1366856_9	Structural annotation	PF07733, PF02811, PF17657, PF06075, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-1366856_11	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1366856_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1366856_11	UniRef90	UniRef90_UPI000BF448AA	PD-(D/E)XK nuclease family protein	NA
UHGV-1366856_11	eggNOG-mapper	706587.Desti_2180	PD-(D/E)XK nuclease superfamily	NA
UHGV-1366856_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1366856_11	COG	COG2887	RecB family exonuclease	NA
UHGV-1366856_11	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1366856_14	KOfam	K03317	TC.CNT; concentrative nucleoside transporter, CNT family	NA
UHGV-1366856_14	PHROG	phrog_25571	NA	unknown function
UHGV-1366856_14	UniRef90	UniRef90_A0A7U6KGX2	Na+ dependent nucleoside transporter NupC	NA
UHGV-1366856_14	eggNOG-mapper	1499683.CCFF01000016_gene803	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family	NA
UHGV-1366856_14	Pfam	PF01773	Na+ dependent nucleoside transporter N-terminus	Nucleos_tra2_N
UHGV-1366856_14	Pfam	PF07670	Nucleoside recognition	Gate
UHGV-1366856_14	Pfam	PF07662	Na+ dependent nucleoside transporter C-terminus	Nucleos_tra2_C
UHGV-1366856_14	COG	COG1972	Nucleoside permease NupC	NA
UHGV-1366856_14	Structural annotation	PF07662, PF01773, TIGR00804, COG1972	NA	NA
UHGV-1366856_15	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-1366856_15	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1366856_15	UniRef90	UniRef90_A0A519DAK4	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1366856_15	eggNOG-mapper	1047013.AQSP01000118_gene1263	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1366856_15	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-1366856_15	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1366856_15	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-1366856_17	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1366856_17	PHROG	phrog_435	endolysin	lysis
UHGV-1366856_17	UniRef90	UniRef90_UPI0017830F60	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1366856_17	eggNOG-mapper	1540257.JQMW01000009_gene2672	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1366856_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1366856_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1366856_17	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1366856_18	PHROG	phrog_13256	NA	unknown function
UHGV-1366856_18	UniRef90	UniRef90_A0A0S6U776	Phage exported protein	NA
UHGV-1366856_18	eggNOG-mapper	445335.CBN_1403	NA	NA
UHGV-1366856_19	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-1366856_19	UniRef90	UniRef90_A0A1S8LFV6	Bacteriocin UviB	NA
UHGV-1366856_19	eggNOG-mapper	1408422.JHYF01000008_gene3776	BhlA holin family	NA
UHGV-1366856_19	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1366856_22	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-1366856_22	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-1366856_22	COG	COG4926	Phage-related protein	NA
UHGV-1366856_23	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1366856_23	eggNOG-mapper	935948.KE386495_gene2274	NA	NA
UHGV-1366856_23	Structural annotation	PF11134, MF_03022, NF010237, TIGR04362, COG5276	NA	NA
UHGV-1366856_26	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1366856_27	PHROG	phrog_35286	NA	unknown function
UHGV-1366856_27	eggNOG-mapper	1151292.QEW_0671	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1366856_27	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1366856_28	UniRef90	UniRef90_UPI000DE5CE6B	BppU family phage baseplate upper protein	NA
UHGV-1366856_31	eggNOG-mapper	1408311.JNJM01000006_gene1536	NA	NA
UHGV-1366856_32	PHROG	phrog_371	major head protein	head and packaging
UHGV-1366856_32	UniRef90	UniRef90_UPI001C21456D	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1366856_32	eggNOG-mapper	411483.FAEPRAA2165_03409	Mu-like prophage major head subunit gpT	NA
UHGV-1366856_32	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1366856_32	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-1366856_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1366856_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-1366856_34	UniRef90	UniRef90_A0A6M3KIA4	Putative head to tail joining protein	NA
UHGV-1366856_34	eggNOG-mapper	935837.JAEK01000054_gene1466	NA	NA
UHGV-1366856_34	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1366856_35	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1366856_35	PHROG	phrog_38407	NA	unknown function
UHGV-1366856_35	UniRef90	UniRef90_UPI000E6C46F7	DNA packaging protein	NA
UHGV-1366856_35	eggNOG-mapper	935837.JAEK01000054_gene1465	Mu-like prophage FluMu protein gp28	NA
UHGV-1366856_35	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1366856_35	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1366856_37	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1366856_41	PHROG	phrog_464	NA	unknown function
UHGV-1366856_41	UniRef90	UniRef90_A0A7C6N278	NA	NA
UHGV-1366856_41	eggNOG-mapper	466051.A7XX89_9CAUD	NA	NA
UHGV-1366856_41	Pfam	PF14216	NA	DUF4326
UHGV-1366856_47	UniRef90	UniRef90_A0A6N8U9Z7	DpnD protein	NA
UHGV-1366856_47	eggNOG-mapper	706436.HMPREF9074_07827	NA	NA
UHGV-1366856_47	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-1366856_48	eggNOG-mapper	665952.HMPREF1015_02320	NA	NA
UHGV-1366856_48	Pfam	PF20111	NA	DUF6501
UHGV-1366856_52	PHROG	phrog_10208	NA	unknown function
UHGV-1366856_55	PHROG	phrog_1192	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1366856_57	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1366856_57	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1366856_57	UniRef90	UniRef90_A0A0W0VZV3	mRNA interferase	NA
UHGV-1366856_57	eggNOG-mapper	994573.T472_0204690	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1366856_57	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1366856_57	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1366856_57	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1366856_61	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1366856_61	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1366856_61	UniRef90	UniRef90_UPI001D1BB111	replicative DNA helicase	NA
UHGV-1366856_61	eggNOG-mapper	999419.HMPREF1077_03096	DnaB-like helicase N terminal domain	NA
UHGV-1366856_61	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1366856_61	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1366856_61	COG	COG0305	Replicative DNA helicase	NA