UHGV-1367530

Genome information

Genome length 74,941 bps

CDS count 85

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1367530
vOTU ID	vOTU-056090
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0348289
BioSample	SAMN04261264
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.13
Jumbo phage	No

Genome content
Genome length	74,941 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	87.06%
Average CDS length	770.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1367530_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1367530_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1367530_1	UniRef90	UniRef90_UPI001C389085	site-specific integrase	NA
UHGV-1367530_1	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1367530_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1367530_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1367530_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1367530_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1367530_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1367530_2	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-1367530_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1367530_4	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1367530_4	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-1367530_4	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-1367530_4	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1367530_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1367530_4	Structural annotation	PF05766	NA	NA
UHGV-1367530_5	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1367530_5	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1367530_5	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1367530_5	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1367530_5	Pfam	PF00692	dUTPase	dUTPase
UHGV-1367530_5	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1367530_5	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1367530_7	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1367530_7	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1367530_7	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1367530_7	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1367530_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-1367530_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1367530_7	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1367530_8	Structural annotation	PF18300, COG5475	NA	NA
UHGV-1367530_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1367530_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1367530_9	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-1367530_9	eggNOG-mapper	857293.CAAU_0781	RecT family	NA
UHGV-1367530_9	Pfam	PF03837	RecT family	RecT
UHGV-1367530_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1367530_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1367530_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1367530_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1367530_10	UniRef90	UniRef90_A0A646FUA9	Recombinase	NA
UHGV-1367530_10	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-1367530_10	Pfam	PF03837	RecT family	RecT
UHGV-1367530_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1367530_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1367530_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1367530_11	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1367530_11	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-1367530_11	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1367530_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1367530_11	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1367530_12	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-1367530_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1367530_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1367530_17	Structural annotation	PF18195, COG5475	NA	NA
UHGV-1367530_25	Structural annotation	PF19070	NA	NA
UHGV-1367530_26	KOfam	K08073	PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]	NA
UHGV-1367530_26	UniRef90	UniRef90_UPI001C46BFDE	HAD-IIIA family hydrolase	NA
UHGV-1367530_26	eggNOG-mapper	4920.XP_004194808.1	Polynucleotide kinase 3 phosphatase	NA
UHGV-1367530_26	Pfam	PF08645	Polynucleotide kinase 3 phosphatase	PNK3P
UHGV-1367530_26	NCBIFam	TIGR01662.1	HAD-IIIA family hydrolase	NA
UHGV-1367530_26	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-1367530_26	Structural annotation	PF08645, MF_01022, TIGR01664, COG0241	NA	NA
UHGV-1367530_27	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1367530_27	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-1367530_27	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-1367530_27	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1367530_27	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1367530_27	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1367530_28	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-1367530_28	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1367530_29	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1367530_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1367530_30	PHROG	phrog_822	amidase	lysis
UHGV-1367530_30	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1367530_30	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1367530_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1367530_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1367530_30	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1367530_31	PHROG	phrog_20732	NA	unknown function
UHGV-1367530_31	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-1367530_31	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1367530_31	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1367530_33	PHROG	phrog_27246	NA	unknown function
UHGV-1367530_35	PHROG	phrog_32516	NA	unknown function
UHGV-1367530_35	eggNOG-mapper	563031.HMPREF0666_01131	NA	NA
UHGV-1367530_35	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1367530_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1367530_36	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-1367530_36	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1367530_36	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1367530_36	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1367530_39	Structural annotation	PF02368	NA	NA
UHGV-1367530_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-1367530_41	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1367530_41	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1367530_42	PHROG	phrog_22323	NA	unknown function
UHGV-1367530_42	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1367530_43	PHROG	phrog_26635	NA	unknown function
UHGV-1367530_43	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1367530_45	Structural annotation	PF17212	NA	NA
UHGV-1367530_46	Structural annotation	PF17994	NA	NA
UHGV-1367530_47	PHROG	phrog_13518	NA	unknown function
UHGV-1367530_47	UniRef90	UniRef90_UPI0013D1DF92	CotH kinase family protein	NA
UHGV-1367530_47	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-1367530_47	Pfam	PF08757	CotH kinase protein	CotH
UHGV-1367530_47	Structural annotation	PF08757, COG5337	NA	NA
UHGV-1367530_48	KOfam	K19613	SHOC2, SUR8; leucine-rich repeat protein SHOC2	NA
UHGV-1367530_48	Structural annotation	NF033190, COG4886	NA	NA
UHGV-1367530_50	PHROG	phrog_29674	NA	unknown function
UHGV-1367530_50	eggNOG-mapper	1217648.F933_02551	NA	NA
UHGV-1367530_51	PHROG	phrog_16490	NA	unknown function
UHGV-1367530_51	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1367530_51	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1367530_52	PHROG	phrog_31654	NA	unknown function
UHGV-1367530_52	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1367530_53	PHROG	phrog_28898	NA	unknown function
UHGV-1367530_53	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-1367530_53	Structural annotation	PF10781	NA	NA
UHGV-1367530_55	PHROG	phrog_38431	NA	unknown function
UHGV-1367530_55	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-1367530_55	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1367530_57	PHROG	phrog_14770	NA	unknown function
UHGV-1367530_57	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-1367530_57	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-1367530_57	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1367530_57	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-1367530_57	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-1367530_57	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1367530_57	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1367530_60	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-1367530_62	UniRef90	UniRef90_K1UH98	DNA-binding protein	NA
UHGV-1367530_62	eggNOG-mapper	693979.Bache_2821	Helix-turn-helix XRE-family like proteins	NA
UHGV-1367530_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1367530_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1367530_64	Structural annotation	PF20012	NA	NA
UHGV-1367530_65	Structural annotation	PF20012	NA	NA
UHGV-1367530_69	Structural annotation	PF18300	NA	NA
UHGV-1367530_75	PHROG	phrog_8684	NA	unknown function
UHGV-1367530_75	UniRef90	UniRef90_K1SIW5	YopX domain-containing protein	NA
UHGV-1367530_75	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-1367530_75	Pfam	PF09643	YopX protein	YopX
UHGV-1367530_75	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1367530_77	Structural annotation	PF10623	NA	NA
UHGV-1367530_80	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1367530_80	UniRef90	UniRef90_A0A3E5E2Y4	HNH endonuclease	NA
UHGV-1367530_80	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1367530_80	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1367530_80	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1367530_80	Structural annotation	COG1403	NA	NA
UHGV-1367530_81	Structural annotation	TIGR00739	NA	NA
UHGV-1367530_82	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-1367530_82	Structural annotation	PF12961	NA	NA
UHGV-1367530_85	UniRef90	UniRef90_A0A414XP91	NA	NA
UHGV-1367530_85	eggNOG-mapper	1348635.BBJY01000026_gene2290	NA	NA
UHGV-1367530_85	Pfam	PF04480	NA	DUF559
UHGV-1367530_85	COG	COG2852	Very-short-patch-repair endonuclease	NA